Literature DB >> 19844740

Genome-scale approaches to the epigenetics of common human disease.

Andrew P Feinberg1.   

Abstract

Traditionally, the pathology of human disease has been focused on microscopic examination of affected tissues, chemical and biochemical analysis of biopsy samples, other available samples of convenience, such as blood, and noninvasive or invasive imaging of varying complexity, in order to classify disease and illuminate its mechanistic basis. The molecular age has complemented this armamentarium with gene expression arrays and selective analysis of individual genes. However, we are entering a new era of epigenomic profiling, i.e., genome-scale analysis of cell-heritable nonsequence genetic change, such as DNA methylation. The epigenome offers access to stable measurements of cellular state and to biobanked material for large-scale epidemiological studies. Some of these genome-scale technologies are beginning to be applied to create the new field of epigenetic epidemiology.

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Year:  2009        PMID: 19844740      PMCID: PMC3107986          DOI: 10.1007/s00428-009-0847-2

Source DB:  PubMed          Journal:  Virchows Arch        ISSN: 0945-6317            Impact factor:   4.064


  83 in total

Review 1.  The history of cancer epigenetics.

Authors:  Andrew P Feinberg; Benjamin Tycko
Journal:  Nat Rev Cancer       Date:  2004-02       Impact factor: 60.716

Review 2.  X-chromosome inactivation and cell memory.

Authors:  A D Riggs; G P Pfeifer
Journal:  Trends Genet       Date:  1992-05       Impact factor: 11.639

3.  A longitudinal study of X-inactivation ratio in human females.

Authors:  Ionel Sandovici; Anna K Naumova; Mark Leppert; Yendi Linares; Carmen Sapienza
Journal:  Hum Genet       Date:  2004-08-28       Impact factor: 4.132

Review 4.  Phenotypic plasticity and the epigenetics of human disease.

Authors:  Andrew P Feinberg
Journal:  Nature       Date:  2007-05-24       Impact factor: 49.962

5.  Comprehensive high-throughput arrays for relative methylation (CHARM).

Authors:  Rafael A Irizarry; Christine Ladd-Acosta; Benilton Carvalho; Hao Wu; Sheri A Brandenburg; Jeffrey A Jeddeloh; Bo Wen; Andrew P Feinberg
Journal:  Genome Res       Date:  2008-03-03       Impact factor: 9.043

6.  Recessive symptomatic focal epilepsy and mutant contactin-associated protein-like 2.

Authors:  Kevin A Strauss; Erik G Puffenberger; Matthew J Huentelman; Steven Gottlieb; Seth E Dobrin; Jennifer M Parod; Dietrich A Stephan; D Holmes Morton
Journal:  N Engl J Med       Date:  2006-03-30       Impact factor: 91.245

7.  Age, Gene/Environment Susceptibility-Reykjavik Study: multidisciplinary applied phenomics.

Authors:  Tamara B Harris; Lenore J Launer; Gudny Eiriksdottir; Olafur Kjartansson; Palmi V Jonsson; Gunnar Sigurdsson; Gudmundur Thorgeirsson; Thor Aspelund; Melissa E Garcia; Mary Frances Cotch; Howard J Hoffman; Vilmundur Gudnason
Journal:  Am J Epidemiol       Date:  2007-03-10       Impact factor: 4.897

8.  Methyl groups in carcinogenesis: effects on DNA methylation and gene expression.

Authors:  E Wainfan; L A Poirier
Journal:  Cancer Res       Date:  1992-04-01       Impact factor: 12.701

Review 9.  Epigenetics and the environment.

Authors:  Jessica E Sutherland; Max Costa
Journal:  Ann N Y Acad Sci       Date:  2003-03       Impact factor: 5.691

Review 10.  Mutational and selective effects on copy-number variants in the human genome.

Authors:  Gregory M Cooper; Deborah A Nickerson; Evan E Eichler
Journal:  Nat Genet       Date:  2007-07       Impact factor: 38.330

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  58 in total

Review 1.  Stress and the epigenetic landscape: a link to the pathobiology of human diseases?

Authors:  Sarah E Johnstone; Stephen B Baylin
Journal:  Nat Rev Genet       Date:  2010-10-05       Impact factor: 53.242

Review 2.  On chromatin remodeling in mammary gland differentiation and breast tumorigenesis.

Authors:  Kornelia Polyak
Journal:  Cold Spring Harb Perspect Biol       Date:  2012-03-01       Impact factor: 10.005

3.  Two-step epigenetic Mendelian randomization: a strategy for establishing the causal role of epigenetic processes in pathways to disease.

Authors:  Caroline L Relton; George Davey Smith
Journal:  Int J Epidemiol       Date:  2012-02       Impact factor: 7.196

4.  Normal early pregnancy: a transient state of epigenetic change favoring hypomethylation.

Authors:  Wendy M White; Brian C Brost; Zhifu Sun; Carl Rose; Iasmina Craici; Steven J Wagner; Stephen Turner; Vesna D Garovic
Journal:  Epigenetics       Date:  2012-07-01       Impact factor: 4.528

Review 5.  The epigenomic interface between genome and environment in common complex diseases.

Authors:  Christopher G Bell; Stephan Beck
Journal:  Brief Funct Genomics       Date:  2010-11-08       Impact factor: 4.241

6.  Genomic imprinting in diabetes.

Authors:  Braxton D Mitchell; Toni I Pollin
Journal:  Genome Med       Date:  2010-08-23       Impact factor: 11.117

7.  Variable selection in semi-parametric models.

Authors:  Hongmei Zhang; Arnab Maity; Hasan Arshad; John Holloway; Wilfried Karmaus
Journal:  Stat Methods Med Res       Date:  2013-08-28       Impact factor: 3.021

Review 8.  Epigenetic memory in development and disease: Unraveling the mechanism.

Authors:  Sam Thiagalingam
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2020-01-23       Impact factor: 10.680

9.  Tobacco-smoking-related differential DNA methylation: 27K discovery and replication.

Authors:  Lutz P Breitling; Rongxi Yang; Bernhard Korn; Barbara Burwinkel; Hermann Brenner
Journal:  Am J Hum Genet       Date:  2011-03-31       Impact factor: 11.025

Review 10.  Epigenetic research in cancer epidemiology: trends, opportunities, and challenges.

Authors:  Mukesh Verma; Scott Rogers; Rao L Divi; Sheri D Schully; Stefanie Nelson; L Joseph Su; Sharon A Ross; Susan Pilch; Deborah M Winn; Muin J Khoury
Journal:  Cancer Epidemiol Biomarkers Prev       Date:  2013-12-10       Impact factor: 4.254

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