Literature DB >> 19843468

Streptavidin 2D crystal substrates for visualizing biomolecular processes by atomic force microscopy.

Daisuke Yamamoto1, Naoki Nagura, Saeko Omote, Masaaki Taniguchi, Toshio Ando.   

Abstract

Flat substrate surfaces are a key to successful imaging of biological macromolecules by atomic force microscopy (AFM). Although usable substrate surfaces have been prepared for still imaging of immobilized molecules, surfaces that are more suitable have recently been required for dynamic imaging to accompany the progress of the scan speed of AFM. In fact, the state-of-the-art high-speed AFM has achieved temporal resolution of 30 ms, a capacity allowing us to trace molecular processes played by biological macromolecules. Here, we characterize three types of streptavidin two-dimensional crystals as substrates, concerning their qualities of surface roughness, uniformity, stability, and resistance to nonspecific protein adsorption. These crystal surfaces are commonly resistant to nonspecific protein adsorption, but exhibit differences in other properties to some extent. These differences must be taken into consideration, but these crystal surfaces are still useful for dynamic AFM imaging, as demonstrated by observation of calcium-induced changes in calmodulin, GroES binding to GroEL, and actin polymerization on the surfaces.

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Year:  2009        PMID: 19843468      PMCID: PMC2764062          DOI: 10.1016/j.bpj.2009.07.046

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  39 in total

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Authors:  D J Müller; A Engel
Journal:  J Mol Biol       Date:  1999-01-29       Impact factor: 5.469

6.  Anisotropic diffusion of point defects in a two-dimensional crystal of streptavidin observed by high-speed atomic force microscopy.

Authors:  Daisuke Yamamoto; Takayuki Uchihashi; Noriyuki Kodera; Toshio Ando
Journal:  Nanotechnology       Date:  2008-08-12       Impact factor: 3.874

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Journal:  J Mol Biol       Date:  1988-11-05       Impact factor: 5.469

9.  Identification of the single specific IQ motif of myosin V from which calmodulin dissociates in the presence of Ca2+.

Authors:  Hiroshi Koide; Tatsuya Kinoshita; Yusuke Tanaka; Shin'ichiro Tanaka; Naoki Nagura; Gabriele Meyer zu Hörste; Atsushi Miyagi; Toshio Ando
Journal:  Biochemistry       Date:  2006-09-26       Impact factor: 3.162

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Journal:  Biophys J       Date:  1999-02       Impact factor: 4.033

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  16 in total

1.  Guide to video recording of structure dynamics and dynamic processes of proteins by high-speed atomic force microscopy.

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Journal:  Nat Protoc       Date:  2012-05-24       Impact factor: 13.491

Review 2.  Single-molecule approaches to probe the structure, kinetics, and thermodynamics of nucleoprotein complexes that regulate transcription.

Authors:  Laura Finzi; David D Dunlap
Journal:  J Biol Chem       Date:  2010-04-09       Impact factor: 5.157

3.  Actin assembly at model-supported lipid bilayers.

Authors:  George R Heath; Benjamin R G Johnson; Peter D Olmsted; Simon D Connell; Stephen D Evans
Journal:  Biophys J       Date:  2013-11-19       Impact factor: 4.033

4.  Atomic force microscopy study of the conformational change in immobilized calmodulin.

Authors:  Sanja Trajkovic; Xiaoning Zhang; Sylvia Daunert; Yuguang Cai
Journal:  Langmuir       Date:  2011-07-27       Impact factor: 3.882

Review 5.  Atomic force microscopy with sub-picoNewton force stability for biological applications.

Authors:  Ruby May A Sullan; Allison B Churnside; Duc M Nguyen; Matthew S Bull; Thomas T Perkins
Journal:  Methods       Date:  2013-04-04       Impact factor: 3.608

6.  Tuning membrane protein mobility by confinement into nanodomains.

Authors:  Andreas Karner; Benedikt Nimmervoll; Birgit Plochberger; Enrico Klotzsch; Andreas Horner; Denis G Knyazev; Roland Kuttner; Klemens Winkler; Lukas Winter; Christine Siligan; Nicole Ollinger; Peter Pohl; Johannes Preiner
Journal:  Nat Nanotechnol       Date:  2016-11-14       Impact factor: 39.213

Review 7.  Filming biomolecular processes by high-speed atomic force microscopy.

Authors:  Toshio Ando; Takayuki Uchihashi; Simon Scheuring
Journal:  Chem Rev       Date:  2014-01-30       Impact factor: 60.622

8.  A combined approach to characterize ligand-induced solid-solid phase transitions in biomacromolecular crystals.

Authors:  Saminathan Ramakrishnan; Jason R Stagno; Valentin Magidson; William F Heinz; Yun-Xing Wang
Journal:  J Appl Crystallogr       Date:  2021-05-09       Impact factor: 3.304

9.  Lipid-bilayer-assisted two-dimensional self-assembly of DNA origami nanostructures.

Authors:  Yuki Suzuki; Masayuki Endo; Hiroshi Sugiyama
Journal:  Nat Commun       Date:  2015-08-27       Impact factor: 14.919

10.  Plug-and-play pairing via defined divalent streptavidins.

Authors:  Michael Fairhead; Denis Krndija; Ed D Lowe; Mark Howarth
Journal:  J Mol Biol       Date:  2013-09-19       Impact factor: 5.469

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