Literature DB >> 19843459

Curvature generation and pressure profile modulation in membrane by lysolipids: insights from coarse-grained simulations.

Jejoong Yoo1, Qiang Cui.   

Abstract

Although many membrane additives are known to modulate the activities of membrane proteins via perturbing the properties of lipid membrane, the underlying mechanism is often not precisely understood. In this study, we investigate the impact of asymmetrically incorporating single-tailed lysophosphatidylcholine (LPC) into a membrane bilayer using coarse-grained molecular dynamics simulations. Using a simple computational protocol designed to approximately mimic a micropipette setting, we show that asymmetric incorporation of LPC can lead to significant curvature in a bilayer. Detailed analysis of geometrical and mechanical properties (pressure profile) of the resulting mound structure indicates that the degree of pressure profile perturbation is determined not by the local curvature per se but by the packing of lipid headgroups (i.e., area-per-lipid). The findings help provide a concrete basis for understanding the activation mechanism of mechanosensitive channels by asymmetric incorporation of LPC into membrane patches in patch-clamp experiments. The calculated local pressure profiles are valuable to the construction of realistic membrane models for the analysis of mechanosensation in a continuum mechanics framework.

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Year:  2009        PMID: 19843459      PMCID: PMC2764077          DOI: 10.1016/j.bpj.2009.07.051

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  27 in total

1.  Open channel structure of MscL and the gating mechanism of mechanosensitive channels.

Authors:  Eduardo Perozo; D Marien Cortes; Pornthep Sompornpisut; Anna Kloda; Boris Martinac
Journal:  Nature       Date:  2002-08-29       Impact factor: 49.962

2.  Asymmetrical membranes and surface tension.

Authors:  Mounir Traïkia; Dror E Warschawski; Olivier Lambert; Jean-Louis Rigaud; Philippe F Devaux
Journal:  Biophys J       Date:  2002-09       Impact factor: 4.033

3.  Cholesterol hydroxyl group is found to reside in the center of a polyunsaturated lipid membrane.

Authors:  Thad A Harroun; John Katsaras; Stephen R Wassall
Journal:  Biochemistry       Date:  2006-01-31       Impact factor: 3.162

4.  The MARTINI force field: coarse grained model for biomolecular simulations.

Authors:  Siewert J Marrink; H Jelger Risselada; Serge Yefimov; D Peter Tieleman; Alex H de Vries
Journal:  J Phys Chem B       Date:  2007-06-15       Impact factor: 2.991

5.  3D pressure field in lipid membranes and membrane-protein complexes.

Authors:  O H Samuli Ollila; H Jelger Risselada; Martti Louhivuori; Erik Lindahl; Ilpo Vattulainen; Siewert J Marrink
Journal:  Phys Rev Lett       Date:  2009-02-19       Impact factor: 9.161

6.  Elastic deformation and failure of lipid bilayer membranes containing cholesterol.

Authors:  D Needham; R S Nunn
Journal:  Biophys J       Date:  1990-10       Impact factor: 4.033

7.  Physical principles underlying the transduction of bilayer deformation forces during mechanosensitive channel gating.

Authors:  Eduardo Perozo; Anna Kloda; D Marien Cortes; Boris Martinac
Journal:  Nat Struct Biol       Date:  2002-09

8.  Regulation of sodium channel function by bilayer elasticity: the importance of hydrophobic coupling. Effects of Micelle-forming amphiphiles and cholesterol.

Authors:  Jens A Lundbaek; Pia Birn; Anker J Hansen; Rikke Søgaard; Claus Nielsen; Jeffrey Girshman; Michael J Bruno; Sonya E Tape; Jan Egebjerg; Denise V Greathouse; Gwendolyn L Mattice; Roger E Koeppe; Olaf S Andersen
Journal:  J Gen Physiol       Date:  2004-05       Impact factor: 4.086

9.  Cholesterol shows preference for the interior of polyunsaturated lipid membranes.

Authors:  Siewert J Marrink; Alex H de Vries; Thad A Harroun; John Katsaras; Stephen R Wassall
Journal:  J Am Chem Soc       Date:  2007-12-13       Impact factor: 15.419

10.  Gating mechanisms of mechanosensitive channels of large conductance, I: a continuum mechanics-based hierarchical framework.

Authors:  Xi Chen; Qiang Cui; Yuye Tang; Jejoong Yoo; Arun Yethiraj
Journal:  Biophys J       Date:  2008-04-04       Impact factor: 4.033

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  30 in total

1.  Membrane curvature recognition by C-reactive protein using lipoprotein mimics.

Authors:  Min S Wang; Reid E Messersmith; Scott M Reed
Journal:  Soft Matter       Date:  2012-08-14       Impact factor: 3.679

2.  The activation mode of the mechanosensitive ion channel, MscL, by lysophosphatidylcholine differs from tension-induced gating.

Authors:  Nobina Mukherjee; Mac Donald Jose; Jan Peter Birkner; Martin Walko; Helgi I Ingólfsson; Anna Dimitrova; Clément Arnarez; Siewert J Marrink; Armağan Koçer
Journal:  FASEB J       Date:  2014-06-23       Impact factor: 5.191

3.  The lipid composition and physical properties of the yeast vacuole affect the hemifusion-fusion transition.

Authors:  Surya Karunakaran; Rutilio A Fratti
Journal:  Traffic       Date:  2013-03-20       Impact factor: 6.215

4.  The effect of local bending on gating of MscL using a representative volume element and finite element simulation.

Authors:  Omid Bavi; Manouchehr Vossoughi; Reza Naghdabadi; Yousef Jamali
Journal:  Channels (Austin)       Date:  2014       Impact factor: 2.581

Review 5.  Tuning ion channel mechanosensitivity by asymmetry of the transbilayer pressure profile.

Authors:  Boris Martinac; Navid Bavi; Pietro Ridone; Yury A Nikolaev; Adam D Martinac; Yoshitaka Nakayama; Paul R Rohde; Omid Bavi
Journal:  Biophys Rev       Date:  2018-09-04

6.  A comparison of coarse-grained and continuum models for membrane bending in lipid bilayer fusion pores.

Authors:  Jejoong Yoo; Meyer B Jackson; Qiang Cui
Journal:  Biophys J       Date:  2013-02-19       Impact factor: 4.033

7.  A deficiency in arabinogalactan biosynthesis affects Corynebacterium glutamicum mycolate outer membrane stability.

Authors:  Roland Bou Raad; Xavier Méniche; Celia de Sousa-d'Auria; Mohamed Chami; Christophe Salmeron; Marielle Tropis; Cecile Labarre; Mamadou Daffé; Christine Houssin; Nicolas Bayan
Journal:  J Bacteriol       Date:  2010-04-02       Impact factor: 3.490

8.  Deformation of a Two-domain Lipid Bilayer due to Asymmetric Insertion of Lipid-modified Ras Peptides.

Authors:  Zhenlong Li; Alemayehu A Gorfe
Journal:  Soft Matter       Date:  2013-12-21       Impact factor: 3.679

Review 9.  Mechanosensitivity of ion channels based on protein-lipid interactions.

Authors:  Kenjiro Yoshimura; Masahiro Sokabe
Journal:  J R Soc Interface       Date:  2010-03-31       Impact factor: 4.118

10.  Three-dimensional stress field around a membrane protein: atomistic and coarse-grained simulation analysis of gramicidin A.

Authors:  Jejoong Yoo; Qiang Cui
Journal:  Biophys J       Date:  2013-01-08       Impact factor: 4.033

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