Literature DB >> 19842941

Identification of candidate genes for rituximab response in rheumatoid arthritis patients by microarray expression profiling in blood cells.

Antonio Julià1, Mireia Barceló, Alba Erra, Carles Palacio, Sara Marsal.   

Abstract

AIMS: Transient CD20+ B-cell depletion with rituximab is an effective treatment for rheumatoid arthritis (RA). However, there is a subgroup of patients that do not show significant clinical response to rituximab and for these patients, other modes of treatment are preferred. Finding biomarkers for drug response in RA has immense potential for improving treatment and lowering healthcare costs for treating RA patients by facilitating the optimization of their pharmacotherapy. In the present study, we report on gene expression profiles of three different blood cell types in rituximab responders and nonresponder RA patients identifying new candidate genes associated with rituximab response. MATERIALS &
METHODS: Transcriptional profiles of whole-blood, CD4+ T cells and B cells were analyzed from nine female patients (mean age 53 +/- 11 years) with active RA disease (DAS28 > 5.1), starting rituximab therapy using Illumina (CA, USA) gene-expression microarrays. Whole-blood RNA was extracted using the PAXgene system (PreAnalytix, Hombrechtikon, Switzerland) whilst the lymphocyte RNA was obtained following cell isolation using negative selection. Flow cytometry analysis was performed to determine whole blood subpopulations, as well as the lymphocyte isolation purity. A whole-genome expression profiling was performed on the RNA samples prepared from the three blood cell populations using the Illumina Human 6 Beadchip array system version 1 (Illumina). From the group of statistically significant genes showing differential expression in rituximab responders compared with nonresponder RA patients, we selected a group of candidate genes that were subsequently validated in the same RNA samples using TaqMan real-time PCR assays.
RESULTS: Several genes were identified whose level of expression is associated significantly with the response to rituximab in all three blood cell types evaluated (multiple-test corrected p-value < 0.05). Real-time PCR-validated genes include ARG1 (1.6-fold downregulated in responders) and TRAF1 (1.4-fold upregulated in responders) genes in whole blood and TLR4 (1.3-fold upregulated in responders) in CD4+ T cells.
CONCLUSIONS: The present study is the first gene expression microarray analysis reporting on biomarkers of the clinical response to rituximab in RA in blood cells. Following validation in larger cohorts, the identified genes may serve as biomarkers for treatment choice in RA.

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Year:  2009        PMID: 19842941     DOI: 10.2217/pgs.09.99

Source DB:  PubMed          Journal:  Pharmacogenomics        ISSN: 1462-2416            Impact factor:   2.533


  9 in total

Review 1.  A comprehensive review of rituximab therapy in rheumatoid arthritis patients.

Authors:  Soheil Tavakolpour; Samira Alesaeidi; Mohammad Darvishi; Mojtaba GhasemiAdl; Sahar Darabi-Monadi; Meisam Akhlaghdoust; Somayeh Elikaei Behjati; Arash Jafarieh
Journal:  Clin Rheumatol       Date:  2019-08-01       Impact factor: 2.980

2.  RNA-stabilized whole blood samples but not peripheral blood mononuclear cells can be stored for prolonged time periods prior to transcriptome analysis.

Authors:  Svenja Debey-Pascher; Andrea Hofmann; Fatima Kreusch; Gerold Schuler; Beatrice Schuler-Thurner; Joachim L Schultze; Andrea Staratschek-Jox
Journal:  J Mol Diagn       Date:  2011-07       Impact factor: 5.568

Review 3.  Developing Peripheral Blood Gene Expression-Based Diagnostic Tests for Coronary Artery Disease: a Review.

Authors:  Brian Rhees; James A Wingrove
Journal:  J Cardiovasc Transl Res       Date:  2015-06-25       Impact factor: 4.132

4.  A comprehensive molecular interaction map for rheumatoid arthritis.

Authors:  Gang Wu; Lisha Zhu; Jennifer E Dent; Christine Nardini
Journal:  PLoS One       Date:  2010-04-16       Impact factor: 3.240

5.  The interferon type I signature towards prediction of non-response to rituximab in rheumatoid arthritis patients.

Authors:  Hennie G Raterman; Saskia Vosslamber; Sander de Ridder; Michael T Nurmohamed; Willem F Lems; Maarten Boers; Mark van de Wiel; Ben A C Dijkmans; Cornelis L Verweij; Alexandre E Voskuyl
Journal:  Arthritis Res Ther       Date:  2012-04-27       Impact factor: 5.156

6.  Rituximab Downregulates Gene Expression Associated with Cell Proliferation, Survival, and Proteolysis in the Peripheral Blood from Rheumatoid Arthritis Patients: A Link between High Baseline Autophagy-Related ULK1 Expression and Improved Pain Control.

Authors:  Elena V Tchetina; Anastasya N Pivanova; Galina A Markova; Galina V Lukina; Elena N Aleksandrova; Andrey P Aleksankin; Sergey A Makarov; Aleksandr N Kuzin
Journal:  Arthritis       Date:  2016-01-24

Review 7.  Gene expression analysis in RA: towards personalized medicine.

Authors:  A N Burska; K Roget; M Blits; L Soto Gomez; F van de Loo; L D Hazelwood; C L Verweij; A Rowe; G N Goulielmos; L G M van Baarsen; F Ponchel
Journal:  Pharmacogenomics J       Date:  2014-03-04       Impact factor: 3.550

8.  Integrative analysis of genome-wide association studies and gene expression analysis identifies pathways associated with rheumatoid arthritis.

Authors:  Mingming Zhang; Hongbo Mu; Hongchao Lv; Lian Duan; Zhenwei Shang; Jin Li; Yongshuai Jiang; Ruijie Zhang
Journal:  Oncotarget       Date:  2016-02-23

9.  Investigating CD11c expression as a potential genomic biomarker of response to TNF inhibitor biologics in whole blood rheumatoid arthritis samples.

Authors:  Samantha Louise Smith; Stephen Eyre; Annie Yarwood; Kimme Hyrich; Ann W Morgan; A G Wilson; John Isaacs; Darren Plant; Anne Barton
Journal:  Arthritis Res Ther       Date:  2015-12-14       Impact factor: 5.156

  9 in total

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