Literature DB >> 19834907

The structural analysis of protein-protein interactions by NMR spectroscopy.

Mitchell R O'Connell1, Roland Gamsjaeger, Joel P Mackay.   

Abstract

A comprehensive understanding of protein-protein interactions is an important next step in our quest to understand how the information contained in a genome is put into action. Although a number of experimental techniques can report on the existence of a protein- protein interaction, very few can provide detailed structural information. NMR spectroscopy is one of these, and in recent years several complementary NMR approaches, including residual dipolar couplings and the use of paramagnetic effects, have been developed that can provide insight into the structure of protein-protein complexes. In this article, we review these approaches and comment on their strengths and weaknesses.

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Year:  2009        PMID: 19834907     DOI: 10.1002/pmic.200900303

Source DB:  PubMed          Journal:  Proteomics        ISSN: 1615-9853            Impact factor:   3.984


  24 in total

Review 1.  An introduction to biological NMR spectroscopy.

Authors:  Dominique Marion
Journal:  Mol Cell Proteomics       Date:  2013-07-06       Impact factor: 5.911

2.  Structural basis of a physical blockage mechanism for the interaction of response regulator PmrA with connector protein PmrD from Klebsiella pneumoniae.

Authors:  Shih-Chi Luo; Yuan-Chao Lou; Mahalingam Rajasekaran; Yi-Wei Chang; Chwan-Deng Hsiao; Chinpan Chen
Journal:  J Biol Chem       Date:  2013-07-16       Impact factor: 5.157

Review 3.  Characterizing weak protein-protein complexes by NMR residual dipolar couplings.

Authors:  Malene Ringkjøbing Jensen; Jose-Luis Ortega-Roldan; Loïc Salmon; Nico van Nuland; Martin Blackledge
Journal:  Eur Biophys J       Date:  2011-06-28       Impact factor: 1.733

4.  FRETting about the affinity of bimolecular protein-protein interactions.

Authors:  Tao Lin; Brandon L Scott; Adam D Hoppe; Suvobrata Chakravarty
Journal:  Protein Sci       Date:  2018-10       Impact factor: 6.725

Review 5.  Protein-protein interactions: switch from classical methods to proteomics and bioinformatics-based approaches.

Authors:  Armand G Ngounou Wetie; Izabela Sokolowska; Alisa G Woods; Urmi Roy; Katrin Deinhardt; Costel C Darie
Journal:  Cell Mol Life Sci       Date:  2013-04-12       Impact factor: 9.261

6.  Molecular determinants of tetramerization in the KcsA cytoplasmic domain.

Authors:  Guy Kamnesky; Orel Hirschhorn; Hadassa Shaked; Jingfei Chen; Lishan Yao; Jordan H Chill
Journal:  Protein Sci       Date:  2014-08-12       Impact factor: 6.725

7.  Structural and functional analyses of the N-terminal domain of the A subunit of a Bacillus megaterium spore germinant receptor.

Authors:  Yunfeng Li; Kai Jin; Abigail Perez-Valdespino; Kyle Federkiewicz; Andrew Davis; Mark W Maciejewski; Peter Setlow; Bing Hao
Journal:  Proc Natl Acad Sci U S A       Date:  2019-05-21       Impact factor: 11.205

8.  Direct use of 15N relaxation rates as experimental restraints on molecular shape and orientation for docking of protein-protein complexes.

Authors:  Yaroslav Ryabov; G Marius Clore; Charles D Schwieters
Journal:  J Am Chem Soc       Date:  2010-05-05       Impact factor: 15.419

Review 9.  NMR as a unique tool in assessment and complex determination of weak protein-protein interactions.

Authors:  Olga Vinogradova; Jun Qin
Journal:  Top Curr Chem       Date:  2012

10.  Exploiting conformational ensembles in modeling protein-protein interactions on the proteome scale.

Authors:  Guray Kuzu; Attila Gursoy; Ruth Nussinov; Ozlem Keskin
Journal:  J Proteome Res       Date:  2013-04-30       Impact factor: 4.466

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