Literature DB >> 19831375

Sulfur, not too far behind O, N, and C: SH...pi hydrogen bond.

Himansu S Biswal1, Sanjay Wategaonkar.   

Abstract

We report hydrogen-bonded complexes of H(2)S with indole and 3-methyl indole stabilized by the S-H...pi interaction. It is interesting to discover that although sulfur and its hydrides are known as poor hydrogen-bond donor/acceptors, sulfur is not too far behind oxygen, nitrogen, and carbon in regard to forming the pi-type hydrogen bonds. This report also extends the scope of our earlier studies from sigma-type hydrogen-bonded complexes of sulfur (O-H...S and N-H...S sigma-type hydrogen-bonded complexes) to pi-type hydrogen-bonded complexes of sulfur (S-H...pi pi-type hydrogen-bonded complexes). The experiments were carried out using the supersonic jet expansion technique, and the complexes were probed using laser-induced spectroscopy such as laser-induced fluorescence (LIF), resonant two-photon inonization (R2PI), and fluorescence dip infrared spectroscopy (FDIRS). The FDIR spectroscopy revealed that while there was no shift in the N-H stretch, the S-H stretch was red shifted by about 21 cm(-1). For the H(2)O complexes of indole and 3-methylindole, however, there was a significant red shift in the N-H stretch. These observations suggest that H(2)O forms a NH...O type complex, whereas H(2)S prefers to form a SH...pi type complex. The experimental results were complemented by ab initio calculations and energy decomposition analysis. The binding energies for both the sigma-type and pi-type hydrogen-bonded M.L complexes (M = indole and 3-methylindole; L = H(2)O and H(2)S) were calculated by extrapolating MP2 interaction energies to the complete basis set limit. The calculated M.H(2)S (sigma-type) interaction energy (2.74 kcal/mol) was considerably smaller than that of the M.H(2)S pi-type hydrogen-bonded complex (4.89 kcal/mol), which is exactly opposite of the trend found for the M.H(2)O complexes. This is consistent with the experimental observations. Comparison of the S-H...pi interaction with the other type of X-H...pi (X = C, N, and O) shows that the S-H...pi interaction is the strongest among them. In all of the pi-type HB complexes, the dispersion energy component has significant contribution to the total binding energy.

Entities:  

Year:  2009        PMID: 19831375     DOI: 10.1021/jp907747w

Source DB:  PubMed          Journal:  J Phys Chem A        ISSN: 1089-5639            Impact factor:   2.781


  11 in total

1.  Insights into Thiol-Aromatic Interactions: A Stereoelectronic Basis for S-H/π Interactions.

Authors:  Christina R Forbes; Sudipta K Sinha; Himal K Ganguly; Shi Bai; Glenn P A Yap; Sandeep Patel; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2017-01-30       Impact factor: 15.419

2.  Quantum chemical investigation of the intra- and intermolecular proton transfer reactions and hydrogen bonding interactions in 4-amino-5-(2-hydroxyphenyl)-2H-1,2,4-triazole-3(4H)-thione.

Authors:  Namık Özdemir
Journal:  J Mol Model       Date:  2012-09-01       Impact factor: 1.810

3.  On the properties of Se⋯N interaction: the analysis of substituent effects by energy decomposition and orbital interaction.

Authors:  Fangfang Zhou; Ruirui Liu; Jia Tang; Ping Li; Yahui Cui; Houyu Zhang
Journal:  J Mol Model       Date:  2016-01-11       Impact factor: 1.810

4.  Functionally important aromatic-aromatic and sulfur-π interactions in the D2 dopamine receptor.

Authors:  Kristina N-M Daeffler; Henry A Lester; Dennis A Dougherty
Journal:  J Am Chem Soc       Date:  2012-08-31       Impact factor: 15.419

5.  Experimental quantification of electrostatics in X-H···π hydrogen bonds.

Authors:  Miguel Saggu; Nicholas M Levinson; Steven G Boxer
Journal:  J Am Chem Soc       Date:  2012-11-07       Impact factor: 15.419

6.  Unexpected solvent effects on the UV/Vis absorption spectra of o-cresol in toluene and benzene: in contrast with non-aromatic solvents.

Authors:  Dong Zheng; Xiang-Ai Yuan; Haibo Ma; Xiaoxiong Li; Xizhang Wang; Ziteng Liu; Jing Ma
Journal:  R Soc Open Sci       Date:  2018-03-14       Impact factor: 2.963

Review 7.  Molecular Tailoring Approach for the Estimation of Intramolecular Hydrogen Bond Energy.

Authors:  Milind M Deshmukh; Shridhar R Gadre
Journal:  Molecules       Date:  2021-05-14       Impact factor: 4.411

8.  Contributions of methionine to recognition of trimethyllysine in aromatic cage of PHD domains: implications of polarizability, hydrophobicity, and charge on binding.

Authors:  Katherine I Albanese; Marcey L Waters
Journal:  Chem Sci       Date:  2021-06-02       Impact factor: 9.825

9.  The role of Cysteine 6.47 in class A GPCRs.

Authors:  Mireia Olivella; Gianluigi Caltabiano; Arnau Cordomí
Journal:  BMC Struct Biol       Date:  2013-03-15

10.  Dissecting C-H∙∙∙π and N-H∙∙∙π Interactions in Two Proteins Using a Combined Experimental and Computational Approach.

Authors:  Jia Wang; Lishan Yao
Journal:  Sci Rep       Date:  2019-12-27       Impact factor: 4.379

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