Literature DB >> 19822764

Regulative recovery in the sea urchin embryo and the stabilizing role of fail-safe gene network wiring.

Joel Smith1, Eric H Davidson.   

Abstract

Design features that ensure reproducible and invariant embryonic processes are major characteristics of current gene regulatory network models. New cis-regulatory studies on a gene regulatory network subcircuit activated early in the development of the sea urchin embryo reveal a sequence of encoded "fail-safe" regulatory devices. These ensure the maintenance of fate separation between skeletogenic and nonskeletogenic mesoderm lineages. An unexpected consequence of the network design revealed in the course of these experiments is that it enables the embryo to "recover" from regulatory interference that has catastrophic effects if this feature is disarmed. A reengineered regulatory system inserted into the embryo was used to prove how this system operates in vivo. Genomically encoded backup control circuitry thus provides the mechanism underlying a specific example of the regulative development for which the sea urchin embryo has long been famous.

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Year:  2009        PMID: 19822764      PMCID: PMC2775351          DOI: 10.1073/pnas.0910007106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  32 in total

Review 1.  A genomic regulatory network for development.

Authors:  Eric H Davidson; Jonathan P Rast; Paola Oliveri; Andrew Ransick; Cristina Calestani; Chiou-Hwa Yuh; Takuya Minokawa; Gabriele Amore; Veronica Hinman; Cesar Arenas-Mena; Ochan Otim; C Titus Brown; Carolina B Livi; Pei Yun Lee; Roger Revilla; Alistair G Rust; Zheng jun Pan; Maria J Schilstra; Peter J C Clarke; Maria I Arnone; Lee Rowen; R Andrew Cameron; David R McClay; Leroy Hood; Hamid Bolouri
Journal:  Science       Date:  2002-03-01       Impact factor: 47.728

Review 2.  Gene regulatory networks for development.

Authors:  Michael Levine; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2005-03-23       Impact factor: 11.205

3.  Expression and function of blimp1/krox, an alternatively transcribed regulatory gene of the sea urchin endomesoderm network.

Authors:  Carolina B Livi; Eric H Davidson
Journal:  Dev Biol       Date:  2006-05-15       Impact factor: 3.582

4.  cis-regulatory processing of Notch signaling input to the sea urchin glial cells missing gene during mesoderm specification.

Authors:  Andrew Ransick; Eric H Davidson
Journal:  Dev Biol       Date:  2006-06-02       Impact factor: 3.582

Review 5.  Gene regulatory networks and the evolution of animal body plans.

Authors:  Eric H Davidson; Douglas H Erwin
Journal:  Science       Date:  2006-02-10       Impact factor: 47.728

6.  cis-Regulatory inputs of the wnt8 gene in the sea urchin endomesoderm network.

Authors:  Takuya Minokawa; Athula H Wikramanayake; Eric H Davidson
Journal:  Dev Biol       Date:  2005-11-10       Impact factor: 3.582

7.  Repression of mesodermal fate by foxa, a key endoderm regulator of the sea urchin embryo.

Authors:  Paola Oliveri; Katherine D Walton; Eric H Davidson; David R McClay
Journal:  Development       Date:  2006-11       Impact factor: 6.868

8.  Groucho-dependent repression by sloppy-paired 1 differentially positions anterior pair-rule stripes in the Drosophila embryo.

Authors:  Luiz P Andrioli; Adam L Oberstein; Maria S G Corado; Danyang Yu; Stephen Small
Journal:  Dev Biol       Date:  2004-12-15       Impact factor: 3.582

Review 9.  How embryos work: a comparative view of diverse modes of cell fate specification.

Authors:  E H Davidson
Journal:  Development       Date:  1990-03       Impact factor: 6.868

10.  Nuclear beta-catenin is required to specify vegetal cell fates in the sea urchin embryo.

Authors:  C Y Logan; J R Miller; M J Ferkowicz; D R McClay
Journal:  Development       Date:  1999-01       Impact factor: 6.868

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  12 in total

1.  Evolutionary rewiring of gene regulatory network linkages at divergence of the echinoid subclasses.

Authors:  Eric M Erkenbrack; Eric H Davidson
Journal:  Proc Natl Acad Sci U S A       Date:  2015-07-13       Impact factor: 11.205

Review 2.  Evolutionary crossroads in developmental biology: sea urchins.

Authors:  David R McClay
Journal:  Development       Date:  2011-07       Impact factor: 6.868

3.  Wnt6 activates endoderm in the sea urchin gene regulatory network.

Authors:  Jenifer Croce; Ryan Range; Shu-Yu Wu; Esther Miranda; Guy Lhomond; Jeff Chieh-fu Peng; Thierry Lepage; David R McClay
Journal:  Development       Date:  2011-08       Impact factor: 6.868

4.  Specific functions of the Wnt signaling system in gene regulatory networks throughout the early sea urchin embryo.

Authors:  Miao Cui; Natnaree Siriwon; Enhu Li; Eric H Davidson; Isabelle S Peter
Journal:  Proc Natl Acad Sci U S A       Date:  2014-11-10       Impact factor: 11.205

5.  Evo-devo in the era of gene regulatory networks.

Authors:  Antje H L Fischer; Joel Smith
Journal:  Integr Comp Biol       Date:  2012-08-27       Impact factor: 3.326

Review 6.  Morphogenesis in sea urchin embryos: linking cellular events to gene regulatory network states.

Authors:  Deirdre C Lyons; Stacy L Kaltenbach; David R McClay
Journal:  Wiley Interdiscip Rev Dev Biol       Date:  2011-12-27       Impact factor: 5.814

7.  Regeneration in the era of functional genomics and gene network analysis.

Authors:  Joel Smith; Jennifer R Morgan; Steven J Zottoli; Peter J Smith; Joseph D Buxbaum; Ona E Bloom
Journal:  Biol Bull       Date:  2011-08       Impact factor: 1.818

Review 8.  Bacterial artificial chromosomes as recombinant reporter constructs to investigate gene expression and regulation in echinoderms.

Authors:  Katherine M Buckley; Ping Dong; R Andrew Cameron; Jonathan P Rast
Journal:  Brief Funct Genomics       Date:  2018-09-27       Impact factor: 4.241

Review 9.  Modularity and design principles in the sea urchin embryo gene regulatory network.

Authors:  Isabelle S Peter; Eric H Davidson
Journal:  FEBS Lett       Date:  2009-12-17       Impact factor: 4.124

10.  Gene regulatory control in the sea urchin aboral ectoderm: spatial initiation, signaling inputs, and cell fate lockdown.

Authors:  Smadar Ben-Tabou de-Leon; Yi-Hsien Su; Kuan-Ting Lin; Enhu Li; Eric H Davidson
Journal:  Dev Biol       Date:  2012-12-02       Impact factor: 3.582

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