Literature DB >> 19820163

Detection and quantification of Dehalogenimonas and "Dehalococcoides" populations via PCR-based protocols targeting 16S rRNA genes.

Jun Yan1, Brian A Rash, Fred A Rainey, William M Moe.   

Abstract

Members of the haloalkane dechlorinating genus Dehalogenimonas are distantly related to "Dehalococcoides" but share high homology in some variable regions of their 16S rRNA gene sequences. In this study, primers and PCR protocols intended to uniquely target Dehalococcoides were reevaluated, and primers and PCR protocols intended to uniquely target Dehalogenimonas were developed and tested. Use of the genus-specific primers revealed the presence of both bacterial groups in groundwater at a Louisiana Superfund site.

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Year:  2009        PMID： 19820163      PMCID： PMC2786429          DOI： 10.1128/AEM.01938-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  23 in total

1.  Assessment of indigenous reductive dechlorinating potential at a TCE-contaminated site using microcosms, polymerase chain reaction analysis, and site data.

Authors:  D E Fennell; A B Carroll; J M Gossett; S H Zinder
Journal:  Environ Sci Technol       Date:  2001-05-01       Impact factor: 9.028

2.  Molecular analysis of Dehalococcoides 16S ribosomal DNA from chloroethene-contaminated sites throughout North America and Europe.

Authors:  Edwin R Hendrickson; Jo Ann Payne; Roslyn M Young; Mark G Starr; Michael P Perry; Stephen Fahnestock; David E Ellis; Richard C Ebersole
Journal:  Appl Environ Microbiol       Date:  2002-02       Impact factor: 4.792

3.  16S rRNA gene-based detection of tetrachloroethene-dechlorinating Desulfuromonas and Dehalococcoides species.

Authors:  F E Löffler; Q Sun; J Li; J M Tiedje
Journal:  Appl Environ Microbiol       Date:  2000-04       Impact factor: 4.792

4.  Phylogenetic analysis of bacterial populations in an anaerobic microbial consortium capable of degrading saturation concentrations of tetrachloroethylene.

Authors:  Philip C Dennis; Brent E Sleep; Roberta R Fulthorpe; Steven N Liss
Journal:  Can J Microbiol       Date:  2003-01       Impact factor: 2.419

5.  Growth of a Dehalococcoides-like microorganism on vinyl chloride and cis-dichloroethene as electron acceptors as determined by competitive PCR.

Authors:  Alison M Cupples; Alfred M Spormann; Perry L McCarty
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

6.  Complete detoxification of vinyl chloride by an anaerobic enrichment culture and identification of the reductively dechlorinating population as a Dehalococcoides species.

Authors:  Jianzhong He; Kirsti M Ritalahti; Michael R Aiello; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2003-02       Impact factor: 4.792

7.  Dehalogenimonas lykanthroporepellens gen. nov., sp. nov., a reductively dehalogenating bacterium isolated from chlorinated solvent-contaminated groundwater.

Authors:  William M Moe; Jun Yan; M Fernanda Nobre; Milton S da Costa; Fred A Rainey
Journal:  Int J Syst Evol Microbiol       Date:  2009-07-22       Impact factor: 2.747

8.  Phylogenetic characterization of microbial communities that reductively dechlorinate TCE based upon a combination of molecular techniques.

Authors:  Ruth E Richardson; Vishvesh K Bhupathiraju; Donald L Song; Tanuja A Goulet; Lisa Alvarez-Cohen
Journal:  Environ Sci Technol       Date:  2002-06-15       Impact factor: 9.028

9.  Comparison between donor substrates for biologically enhanced tetrachloroethene DNAPL dissolution.

Authors:  Yanru Yang; Perry L McCarty
Journal:  Environ Sci Technol       Date:  2002-08-01       Impact factor: 9.028

10.  Field demonstration of successful bioaugmentation to achieve dechlorination of tetrachloroethene to ethene.

Authors:  David W Major; Michaye L McMaster; Evan E Cox; Elizabeth A Edwards; Sandra M Dworatzek; Edwin R Hendrickson; Mark G Starr; Jo Ann Payne; Lois W Buonamici
Journal:  Environ Sci Technol       Date:  2002-12-01       Impact factor: 9.028
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  11 in total

1.  Rapid Enrichment of Dehalococcoides-Like Bacteria by Partial Hydrophobic Separation.

Authors:  Hanna R Temme; Kipp Sande; Tao Yan; Paige J Novak
Journal:  Appl Environ Microbiol       Date:  2017-03-02       Impact factor: 4.792

2.  Grape pomace compost harbors organohalide-respiring Dehalogenimonas species with novel reductive dehalogenase genes.

Authors:  Yi Yang; Steven A Higgins; Jun Yan; Burcu Şimşir; Karuna Chourey; Ramsunder Iyer; Robert L Hettich; Brett Baldwin; Dora M Ogles; Frank E Löffler
Journal:  ISME J       Date:  2017-08-15       Impact factor: 10.302

3.  Isotopic effects of PCE induced by organohalide-respiring bacteria.

Authors:  Simon Leitner; Harald Berger; Markus Gorfer; Thomas G Reichenauer; Andrea Watzinger
Journal:  Environ Sci Pollut Res Int       Date:  2017-09-15       Impact factor: 4.223

4.  Discovery of a trans-dichloroethene-respiring Dehalogenimonas species in the 1,1,2,2-tetrachloroethane-dechlorinating WBC-2 consortium.

Authors:  Marie J Manchester; Laura A Hug; Matt Zarek; Anna Zila; Elizabeth A Edwards
Journal:  Appl Environ Microbiol       Date:  2012-05-25       Impact factor: 4.792

5.  Identification and environmental distribution of dcpA, which encodes the reductive dehalogenase catalyzing the dichloroelimination of 1,2-dichloropropane to propene in organohalide-respiring chloroflexi.

Authors:  Elizabeth Padilla-Crespo; Jun Yan; Cynthia Swift; Darlene D Wagner; Karuna Chourey; Robert L Hettich; Kirsti M Ritalahti; Frank E Löffler
Journal:  Appl Environ Microbiol       Date:  2013-11-15       Impact factor: 4.792

6.  Phylogenetically distinct bacteria involve extensive dechlorination of aroclor 1260 in sediment-free cultures.

Authors:  Shanquan Wang; Jianzhong He
Journal:  PLoS One       Date:  2013-03-15       Impact factor: 3.240

7.  Complete genome sequence of Dehalogenimonas lykanthroporepellens type strain (BL-DC-9(T)) and comparison to "Dehalococcoides" strains.

Authors:  Shivakumara Siddaramappa; Jean F Challacombe; Susana F Delano; Lance D Green; Hajnalka Daligault; David Bruce; Chris Detter; Roxanne Tapia; Shunsheng Han; Lynne Goodwin; James Han; Tanja Woyke; Sam Pitluck; Len Pennacchio; Matt Nolan; Miriam Land; Yun-Juan Chang; Nikos C Kyrpides; Galina Ovchinnikova; Loren Hauser; Alla Lapidus; Jun Yan; Kimberly S Bowman; Milton S da Costa; Fred A Rainey; William M Moe
Journal:  Stand Genomic Sci       Date:  2012-05-15

Review 8.  Molecular techniques in the biotechnological fight against halogenated compounds in anoxic environments.

Authors:  Chang Ding; Jianzhong He
Journal:  Microb Biotechnol       Date:  2011-11-09       Impact factor: 5.813

9.  Enumeration of Organohalide Respirers in Municipal Wastewater Anaerobic Digesters.

Authors:  Bryan Jk Smith; Melissa A Boothe; Brice A Fiddler; Tania M Lozano; Russel K Rahi; Mark J Krzmarzick
Journal:  Microbiol Insights       Date:  2015-10-13

10.  Dehalogenimonas spp. can Reductively Dehalogenate High Concentrations of 1,2-Dichloroethane, 1,2-Dichloropropane, and 1,1,2-Trichloroethane.

Authors:  Andrew D Maness; Kimberly S Bowman; Jun Yan; Fred A Rainey; William M Moe
Journal:  AMB Express       Date:  2012-10-09       Impact factor: 3.298
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