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Literature DB >> 19820099

Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.

Hidetoshi Morita¹, Hidehiro Toh, Kenshiro Oshima, Masaru Murakami, Todd D Taylor, Shizunobu Igimi, Masahira Hattori.

Abstract

Lactobacillus rhamnosus is a facultatively heterofermentative lactic acid bacterium and is frequently isolated from human gastrointestinal mucosa of healthy individuals. L. rhamnosus ATCC 53103, isolated from a healthy human intestinal flora, is one of the most widely used and well-documented probiotics. Here, we report the finished and annotated genome sequence of this organism.

Entities: Chemical Species

Mesh：

Substances：
DNA, Bacterial

Year: 2009 PMID： 19820099 PMCID： PMC2786603 DOI： 10.1128/JB.01287-09

Source DB: PubMed Journal: J Bacteriol ISSN： 0021-9193 Impact factor: 3.490

7 in total

1. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

Authors: H Tettelin; K E Nelson; I T Paulsen; J A Eisen; T D Read; S Peterson; J Heidelberg; R T DeBoy; D H Haft; R J Dodson; A S Durkin; M Gwinn; J F Kolonay; W C Nelson; J D Peterson; L A Umayam; O White; S L Salzberg; M R Lewis; D Radune; E Holtzapple; H Khouri; A M Wolf; T R Utterback; C L Hansen; L A McDonald; T V Feldblyum; S Angiuoli; T Dickinson; E K Hickey; I E Holt; B J Loftus; F Yang; H O Smith; J C Venter; B A Dougherty; D A Morrison; S K Hollingshead; C M Fraser
Journal: Science Date: 2001-07-20 Impact factor: 47.728

2. C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria.

Authors: Sophie Brinster; Sylviane Furlan; Pascale Serror
Journal: J Bacteriol Date: 2006-09-08 Impact factor: 3.490

3. Comparative genomics of the lactic acid bacteria.

Authors: K Makarova; A Slesarev; Y Wolf; A Sorokin; B Mirkin; E Koonin; A Pavlov; N Pavlova; V Karamychev; N Polouchine; V Shakhova; I Grigoriev; Y Lou; D Rohksar; S Lucas; K Huang; D M Goodstein; T Hawkins; V Plengvidhya; D Welker; J Hughes; Y Goh; A Benson; K Baldwin; J-H Lee; I Díaz-Muñiz; B Dosti; V Smeianov; W Wechter; R Barabote; G Lorca; E Altermann; R Barrangou; B Ganesan; Y Xie; H Rawsthorne; D Tamir; C Parker; F Breidt; J Broadbent; R Hutkins; D O'Sullivan; J Steele; G Unlu; M Saier; T Klaenhammer; P Richardson; S Kozyavkin; B Weimer; D Mills
Journal: Proc Natl Acad Sci U S A Date: 2006-10-09 Impact factor: 11.205

4. Automated finishing with autofinish.

Authors: D Gordon; C Desmarais; P Green
Journal: Genome Res Date: 2001-04 Impact factor: 9.043

5. Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.

Authors: Matti Kankainen; Lars Paulin; Soile Tynkkynen; Ingemar von Ossowski; Justus Reunanen; Pasi Partanen; Reetta Satokari; Satu Vesterlund; Antoni P A Hendrickx; Sarah Lebeer; Sigrid C J De Keersmaecker; Jos Vanderleyden; Tuula Hämäläinen; Suvi Laukkanen; Noora Salovuori; Jarmo Ritari; Edward Alatalo; Riitta Korpela; Tiina Mattila-Sandholm; Anna Lassig; Katja Hatakka; Katri T Kinnunen; Heli Karjalainen; Maija Saxelin; Kati Laakso; Anu Surakka; Airi Palva; Tuomas Salusjärvi; Petri Auvinen; Willem M de Vos
Journal: Proc Natl Acad Sci U S A Date: 2009-09-17 Impact factor: 11.205

6. Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria.

Authors: Roland Siezen; Jos Boekhorst; Lidia Muscariello; Douwe Molenaar; Bernadet Renckens; Michiel Kleerebezem
Journal: BMC Genomics Date: 2006-05-24 Impact factor: 3.969

7. Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.

Authors: Hidetoshi Morita; Hidehiro Toh; Shinji Fukuda; Hiroshi Horikawa; Kenshiro Oshima; Takehito Suzuki; Masaru Murakami; Shin Hisamatsu; Yukio Kato; Tatsuya Takizawa; Hideo Fukuoka; Tetsuhiko Yoshimura; Kikuji Itoh; Daniel J O'Sullivan; Larry L McKay; Hiroshi Ohno; Jun Kikuchi; Toshio Masaoka; Masahira Hattori
Journal: DNA Res Date: 2008-05-16 Impact factor: 4.458

7 in total

40 in total

1. Whole-genome shotgun sequencing of Lactobacillus rhamnosus MTCC 5462, a strain with probiotic potential.

Authors: J B Prajapati; C D Khedkar; J Chitra; Senan Suja; V Mishra; V Sreeja; R K Patel; V B Ahir; V D Bhatt; M R Sajnani; S J Jakhesara; P G Koringa; C G Joshi
Journal: J Bacteriol Date: 2012-03 Impact factor: 3.490

2. Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations.

Authors: Stefan Weckx; Joke Allemeersch; Roel Van der Meulen; Gino Vrancken; Geert Huys; Peter Vandamme; Paul Van Hummelen; Luc De Vuyst
Journal: Appl Environ Microbiol Date: 2010-11-19 Impact factor: 4.792

3. Utilization of natural fucosylated oligosaccharides by three novel alpha-L-fucosidases from a probiotic Lactobacillus casei strain.

Authors: Jesús Rodríguez-Díaz; Vicente Monedero; María J Yebra
Journal: Appl Environ Microbiol Date: 2010-11-19 Impact factor: 4.792

4. Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling.

Authors: Corina Ceapa; Jolanda Lambert; Kees van Limpt; Michiel Wels; Tamara Smokvina; Jan Knol; Michiel Kleerebezem
Journal: Appl Environ Microbiol Date: 2015-06-05 Impact factor: 4.792

Complete genome sequence of the probiotic Lactobacillus rhamnosus ATCC 53103.

1. Complete genome sequence of a virulent isolate of Streptococcus pneumoniae.

2. C-terminal WxL domain mediates cell wall binding in Enterococcus faecalis and other gram-positive bacteria.

3. Comparative genomics of the lactic acid bacteria.

4. Automated finishing with autofinish.

5. Comparative genomic analysis of Lactobacillus rhamnosus GG reveals pili containing a human- mucus binding protein.

6. Lactobacillus plantarum gene clusters encoding putative cell-surface protein complexes for carbohydrate utilization are conserved in specific gram-positive bacteria.

7. Comparative genome analysis of Lactobacillus reuteri and Lactobacillus fermentum reveal a genomic island for reuterin and cobalamin production.

1. Whole-genome shotgun sequencing of Lactobacillus rhamnosus MTCC 5462, a strain with probiotic potential.

2. Metatranscriptome analysis for insight into whole-ecosystem gene expression during spontaneous wheat and spelt sourdough fermentations.

3. Utilization of natural fucosylated oligosaccharides by three novel alpha-L-fucosidases from a probiotic Lactobacillus casei strain.

4. Correlation of Lactobacillus rhamnosus Genotypes and Carbohydrate Utilization Signatures Determined by Phenotype Profiling.

5. Genome sequence of Lactobacillus rhamnosus ATCC 8530.

6. Complete genome sequence of Lactobacillus kefiranofaciens ZW3.

7. In vitro comparison of the effects of probiotic, commensal and pathogenic strains on macrophage polarization.

8. Characterization of a stress tolerance-defective mutant of Lactobacillus rhamnosus LRB.

9. Genome instability in Lactobacillus rhamnosus GG.

10. Lactobacillus rhamnosus GG inhibits the toxic effects of Staphylococcus aureus on epidermal keratinocytes.