Literature DB >> 19817551

Emergence of single-molecule sequencing and potential for molecular diagnostic applications.

Patrice M Milos1.   

Abstract

The effective demonstration of single-molecule sequencing at scale over the last several years offers the exciting opportunity for a new era in the field of molecular diagnostics. As we aim to personalize and deliver cost-effective healthcare, we must consider the need to fully integrate genomics into decision-making. We must be able to accurately and cost effectively obtain a complete genome sequence for disease diagnosis, interrogate a molecular signature from blood for therapeutic monitoring, obtain a tumor mutation profile for optimizing therapeutic choice - each molecular diagnostic measurement utilized to better inform patient care. Would a physician or molecular pathology laboratory want to utilize a PCR process in which millions of DNA copies of a patient's nucleic acid are created when an alternative approach allowing direct measurement of the nucleic acids is possible? I would suggest not! In this article we will focus on the emergence of single-molecule sequencing, the single-molecule sequencing methodologies in the marketplace or under development today, as well as the importance of these methods for molecular characterization and diagnosis of disease with the ultimate application for molecular diagnostics.

Entities:  

Mesh:

Substances:

Year:  2009        PMID: 19817551      PMCID: PMC2949964          DOI: 10.1586/erm.09.50

Source DB:  PubMed          Journal:  Expert Rev Mol Diagn        ISSN: 1473-7159            Impact factor:   5.225


  56 in total

1.  Single-nucleotide discrimination in immobilized DNA oligonucleotides with a biological nanopore.

Authors:  David Stoddart; Andrew J Heron; Ellina Mikhailova; Giovanni Maglia; Hagan Bayley
Journal:  Proc Natl Acad Sci U S A       Date:  2009-04-20       Impact factor: 11.205

2.  Diagnosis of bloodstream infections in immunocompromised patients by real-time PCR.

Authors:  Stefania Varani; Marta Stanzani; Michela Paolucci; Fraia Melchionda; Gastone Castellani; Lorenzo Nardi; Maria Paola Landini; Michele Baccarani; Andrea Pession; Vittorio Sambri
Journal:  J Infect       Date:  2009-03-13       Impact factor: 6.072

3.  Massively parallel exon capture and library-free resequencing across 16 genomes.

Authors:  Emily H Turner; Choli Lee; Sarah B Ng; Deborah A Nickerson; Jay Shendure
Journal:  Nat Methods       Date:  2009-04-06       Impact factor: 28.547

4.  Integrated analysis of homozygous deletions, focal amplifications, and sequence alterations in breast and colorectal cancers.

Authors:  Rebecca J Leary; Jimmy C Lin; Jordan Cummins; Simina Boca; Laura D Wood; D Williams Parsons; Siân Jones; Tobias Sjöblom; Ben-Ho Park; Ramon Parsons; Joseph Willis; Dawn Dawson; James K V Willson; Tatiana Nikolskaya; Yuri Nikolsky; Levy Kopelovich; Nick Papadopoulos; Len A Pennacchio; Tian-Li Wang; Sanford D Markowitz; Giovanni Parmigiani; Kenneth W Kinzler; Bert Vogelstein; Victor E Velculescu
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-13       Impact factor: 11.205

5.  Quantitative plasma DNA analysis in Parkinson's disease.

Authors:  Paula Luciana Scalzo; Nilo Ikuta; Francisco Cardoso; Andrea Regner; Antônio Lúcio Teixeira
Journal:  Neurosci Lett       Date:  2009-03-06       Impact factor: 3.046

6.  The diploid genome sequence of an Asian individual.

Authors:  Jun Wang; Wei Wang; Ruiqiang Li; Yingrui Li; Geng Tian; Laurie Goodman; Wei Fan; Junqing Zhang; Jun Li; Juanbin Zhang; Yiran Guo; Binxiao Feng; Heng Li; Yao Lu; Xiaodong Fang; Huiqing Liang; Zhenglin Du; Dong Li; Yiqing Zhao; Yujie Hu; Zhenzhen Yang; Hancheng Zheng; Ines Hellmann; Michael Inouye; John Pool; Xin Yi; Jing Zhao; Jinjie Duan; Yan Zhou; Junjie Qin; Lijia Ma; Guoqing Li; Zhentao Yang; Guojie Zhang; Bin Yang; Chang Yu; Fang Liang; Wenjie Li; Shaochuan Li; Dawei Li; Peixiang Ni; Jue Ruan; Qibin Li; Hongmei Zhu; Dongyuan Liu; Zhike Lu; Ning Li; Guangwu Guo; Jianguo Zhang; Jia Ye; Lin Fang; Qin Hao; Quan Chen; Yu Liang; Yeyang Su; A San; Cuo Ping; Shuang Yang; Fang Chen; Li Li; Ke Zhou; Hongkun Zheng; Yuanyuan Ren; Ling Yang; Yang Gao; Guohua Yang; Zhuo Li; Xiaoli Feng; Karsten Kristiansen; Gane Ka-Shu Wong; Rasmus Nielsen; Richard Durbin; Lars Bolund; Xiuqing Zhang; Songgang Li; Huanming Yang; Jian Wang
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

7.  Noninvasive diagnosis of fetal aneuploidy by shotgun sequencing DNA from maternal blood.

Authors:  H Christina Fan; Yair J Blumenfeld; Usha Chitkara; Louanne Hudgins; Stephen R Quake
Journal:  Proc Natl Acad Sci U S A       Date:  2008-10-06       Impact factor: 11.205

8.  Comprehensive genomic characterization defines human glioblastoma genes and core pathways.

Authors: 
Journal:  Nature       Date:  2008-09-04       Impact factor: 49.962

9.  DNA sequencing of a cytogenetically normal acute myeloid leukaemia genome.

Authors:  Timothy J Ley; Elaine R Mardis; Li Ding; Bob Fulton; Michael D McLellan; Ken Chen; David Dooling; Brian H Dunford-Shore; Sean McGrath; Matthew Hickenbotham; Lisa Cook; Rachel Abbott; David E Larson; Dan C Koboldt; Craig Pohl; Scott Smith; Amy Hawkins; Scott Abbott; Devin Locke; Ladeana W Hillier; Tracie Miner; Lucinda Fulton; Vincent Magrini; Todd Wylie; Jarret Glasscock; Joshua Conyers; Nathan Sander; Xiaoqi Shi; John R Osborne; Patrick Minx; David Gordon; Asif Chinwalla; Yu Zhao; Rhonda E Ries; Jacqueline E Payton; Peter Westervelt; Michael H Tomasson; Mark Watson; Jack Baty; Jennifer Ivanovich; Sharon Heath; William D Shannon; Rakesh Nagarajan; Matthew J Walter; Daniel C Link; Timothy A Graubert; John F DiPersio; Richard K Wilson
Journal:  Nature       Date:  2008-11-06       Impact factor: 49.962

10.  Resequencing arrays for diagnostics of respiratory pathogens.

Authors:  Baochuan Lin; Anthony P Malanoski
Journal:  Methods Mol Biol       Date:  2009
View more
  14 in total

Review 1.  Next generation sequencing for clinical diagnostics-principles and application to targeted resequencing for hypertrophic cardiomyopathy: a paper from the 2009 William Beaumont Hospital Symposium on Molecular Pathology.

Authors:  Karl V Voelkerding; Shale Dames; Jacob D Durtschi
Journal:  J Mol Diagn       Date:  2010-09       Impact factor: 5.568

Review 2.  Next-generation sequencing in the clinic: promises and challenges.

Authors:  Jiekun Xuan; Ying Yu; Tao Qing; Lei Guo; Leming Shi
Journal:  Cancer Lett       Date:  2012-11-19       Impact factor: 8.679

3.  Enhanced Single-Molecule Detection using Porous Silver Membrane.

Authors:  Yi Fu; Joseph R Lakowicz
Journal:  J Phys Chem C Nanomater Interfaces       Date:  2010-04-29       Impact factor: 4.126

Review 4.  Improving pancreatic cancer diagnosis using circulating tumor cells: prospects for staging and single-cell analysis.

Authors:  Colin M Court; Jacob S Ankeny; Shuang Hou; Hsian-Rong Tseng; James S Tomlinson
Journal:  Expert Rev Mol Diagn       Date:  2015-09-21       Impact factor: 5.225

5.  Single-step capture and sequencing of natural DNA for detection of BRCA1 mutations.

Authors:  John F Thompson; Jeffrey G Reifenberger; Eldar Giladi; Kristen Kerouac; Jaime Gill; Erik Hansen; Avak Kahvejian; Philipp Kapranov; Travis Knope; Doron Lipson; Kathleen E Steinmann; Patrice M Milos
Journal:  Genome Res       Date:  2011-07-15       Impact factor: 9.043

Review 6.  Cell Separations and Sorting.

Authors:  Malgorzata A Witek; Ian M Freed; Steven A Soper
Journal:  Anal Chem       Date:  2019-12-20       Impact factor: 6.986

Review 7.  DNA sequencing and bar-coding using solid-state nanopores.

Authors:  Evrim Atas; Alon Singer; Amit Meller
Journal:  Electrophoresis       Date:  2012-10-30       Impact factor: 3.535

8.  Survival bias and drug interaction can attenuate cross-sectional case-control comparisons of genes with health outcomes. An example of the kinesin-like protein 6 (KIF6) Trp719Arg polymorphism and coronary heart disease.

Authors:  Paul Williams; Lakshmana Pendyala; Robert Superko
Journal:  BMC Med Genet       Date:  2011-03-24       Impact factor: 2.103

Review 9.  The properties and applications of single-molecule DNA sequencing.

Authors:  John F Thompson; Patrice M Milos
Journal:  Genome Biol       Date:  2011-02-24       Impact factor: 13.583

Review 10.  Recent advances in integrated solid-state nanopore sensors.

Authors:  Mahmudur Rahman; Mohammad Julker Neyen Sampad; Aaron Hawkins; Holger Schmidt
Journal:  Lab Chip       Date:  2021-06-17       Impact factor: 7.517

View more

北京卡尤迪生物科技股份有限公司 © 2022-2023.