Literature DB >> 1981621

Distinguishing error from chaos in ecological time series.

G Sugihara1, B Grenfell, R M May.   

Abstract

Over the years, there has been much discussion about the relative importance of environmental and biological factors in regulating natural populations. Often it is thought that environmental factors are associated with stochastic fluctuations in population density, and biological ones with deterministic regulation. We revisit these ideas in the light of recent work on chaos and nonlinear systems. We show that completely deterministic regulatory factors can lead to apparently random fluctuations in population density, and we then develop a new method (that can be applied to limited data sets) to make practical distinctions between apparently noisy dynamics produced by low-dimensional chaos and population variation that in fact derives from random (high-dimensional) noise, such as environmental stochasticity or sampling error. To show its practical use, the method is first applied to models where the dynamics are known. We then apply the method to several sets of real data, including newly analysed data on the incidence of measles in the United Kingdom. Here the additional problems of secular trends and spatial effects are explored. In particular, we find that on a city-by-city scale measles exhibits low-dimensional chaos (as has previously been found for measles in New York City), whereas on a larger, country-wide scale the dynamics appear as a noisy two-year cycle. In addition to shedding light on the basic dynamics of some nonlinear biological systems, this work dramatizes how the scale on which data is collected and analysed can affect the conclusions drawn.

Mesh:

Year:  1990        PMID: 1981621     DOI: 10.1098/rstb.1990.0195

Source DB:  PubMed          Journal:  Philos Trans R Soc Lond B Biol Sci        ISSN: 0962-8436            Impact factor:   6.237


  21 in total

1.  Residual delay maps unveil global patterns of atmospheric nonlinearity and produce improved local forecasts.

Authors:  G Sugihara; M Casdagli; E Habjan; D Hess; P Dixon; G Holland
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

2.  Anatomy of a chaotic attractor: subtle model-predicted patterns revealed in population data.

Authors:  Aaron A King; R F Costantino; J M Cushing; Shandelle M Henson; Robert A Desharnais; Brian Dennis
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-17       Impact factor: 11.205

3.  Tracking and forecasting ecosystem interactions in real time.

Authors:  Ethan R Deyle; Robert M May; Stephan B Munch; George Sugihara
Journal:  Proc Biol Sci       Date:  2016-01-13       Impact factor: 5.349

4.  Unusual dynamics of extinction in a simple ecological model.

Authors:  S Sinha; S Parthasarathy
Journal:  Proc Natl Acad Sci U S A       Date:  1996-02-20       Impact factor: 11.205

5.  Impact of vaccination on the spatial correlation and persistence of measles dynamics.

Authors:  B M Bolker; B T Grenfell
Journal:  Proc Natl Acad Sci U S A       Date:  1996-10-29       Impact factor: 11.205

6.  Population regulation in snowshoe hare and Canadian lynx: asymmetric food web configurations between hare and lynx.

Authors:  N C Stenseth; W Falck; O N Bjornstad; C J Krebs
Journal:  Proc Natl Acad Sci U S A       Date:  1997-05-13       Impact factor: 11.205

7.  Global environmental drivers of influenza.

Authors:  Ethan R Deyle; M Cyrus Maher; Ryan D Hernandez; Sanjay Basu; George Sugihara
Journal:  Proc Natl Acad Sci U S A       Date:  2016-10-31       Impact factor: 11.205

8.  Timing and periodicity of influenza epidemics.

Authors:  Ottar N Bjørnstad; Cecile Viboud
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-03       Impact factor: 11.205

9.  Locally embedded presages of global network bursts.

Authors:  Satohiro Tajima; Takeshi Mita; Douglas J Bakkum; Hirokazu Takahashi; Taro Toyoizumi
Journal:  Proc Natl Acad Sci U S A       Date:  2017-08-21       Impact factor: 11.205

Review 10.  A guide to dynamical analysis.

Authors:  P E Rapp
Journal:  Integr Physiol Behav Sci       Date:  1994 Jul-Sep
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