Literature DB >> 27799563

Global environmental drivers of influenza.

Ethan R Deyle1, M Cyrus Maher2,3, Ryan D Hernandez4, Sanjay Basu5, George Sugihara6.   

Abstract

In temperate countries, influenza outbreaks are well correlated to seasonal changes in temperature and absolute humidity. However, tropical countries have much weaker annual climate cycles, and outbreaks show less seasonality and are more difficult to explain with environmental correlations. Here, we use convergent cross mapping, a robust test for causality that does not require correlation, to test alternative hypotheses about the global environmental drivers of influenza outbreaks from country-level epidemic time series. By moving beyond correlation, we show that despite the apparent differences in outbreak patterns between temperate and tropical countries, absolute humidity and, to a lesser extent, temperature drive influenza outbreaks globally. We also find a hypothesized U-shaped relationship between absolute humidity and influenza that is predicted by theory and experiment, but hitherto has not been documented at the population level. The balance between positive and negative effects of absolute humidity appears to be mediated by temperature, and the analysis reveals a key threshold around 75 °F. The results indicate a unified explanation for environmental drivers of influenza that applies globally.

Keywords:  empirical dynamic modeling; epidemiology; nonlinear dynamics; physical–biological coupling; state-dependence

Mesh:

Year:  2016        PMID: 27799563      PMCID: PMC5135382          DOI: 10.1073/pnas.1607747113

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  21 in total

1.  Episodic fluctuations in larval supply

Authors: 
Journal:  Science       Date:  1999-03-05       Impact factor: 47.728

2.  Tracking and forecasting ecosystem interactions in real time.

Authors:  Ethan R Deyle; Robert M May; Stephan B Munch; George Sugihara
Journal:  Proc Biol Sci       Date:  2016-01-13       Impact factor: 5.349

3.  The global circulation of seasonal influenza A (H3N2) viruses.

Authors:  Colin A Russell; Terry C Jones; Ian G Barr; Nancy J Cox; Rebecca J Garten; Vicky Gregory; Ian D Gust; Alan W Hampson; Alan J Hay; Aeron C Hurt; Jan C de Jong; Anne Kelso; Alexander I Klimov; Tsutomu Kageyama; Naomi Komadina; Alan S Lapedes; Yi P Lin; Ana Mosterin; Masatsugu Obuchi; Takato Odagiri; Albert D M E Osterhaus; Guus F Rimmelzwaan; Michael W Shaw; Eugene Skepner; Klaus Stohr; Masato Tashiro; Ron A M Fouchier; Derek J Smith
Journal:  Science       Date:  2008-04-18       Impact factor: 47.728

4.  Structural explanation for the effect of humidity on persistence of airborne virus: seasonality of influenza.

Authors:  S M Minhaz Ud-Dean
Journal:  J Theor Biol       Date:  2010-03-19       Impact factor: 2.691

5.  Dynamical evidence for causality between galactic cosmic rays and interannual variation in global temperature.

Authors:  Anastasios A Tsonis; Ethan R Deyle; Robert M May; George Sugihara; Kyle Swanson; Joshua D Verbeten; Geli Wang
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-02       Impact factor: 11.205

6.  Nonlinear forecasting as a way of distinguishing chaos from measurement error in time series.

Authors:  G Sugihara; R M May
Journal:  Nature       Date:  1990-04-19       Impact factor: 49.962

7.  Absolute humidity and the seasonal onset of influenza in the continental United States.

Authors:  Jeffrey Shaman; Virginia E Pitzer; Cécile Viboud; Bryan T Grenfell; Marc Lipsitch
Journal:  PLoS Biol       Date:  2010-02-23       Impact factor: 8.029

8.  Absolute humidity modulates influenza survival, transmission, and seasonality.

Authors:  Jeffrey Shaman; Melvin Kohn
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-09       Impact factor: 11.205

9.  Mapping the antigenic and genetic evolution of influenza virus.

Authors:  Derek J Smith; Alan S Lapedes; Jan C de Jong; Theo M Bestebroer; Guus F Rimmelzwaan; Albert D M E Osterhaus; Ron A M Fouchier
Journal:  Science       Date:  2004-06-24       Impact factor: 47.728

10.  Environmental predictors of seasonal influenza epidemics across temperate and tropical climates.

Authors:  James D Tamerius; Jeffrey Shaman; Wladimir J Alonso; Wladmir J Alonso; Kimberly Bloom-Feshbach; Christopher K Uejio; Andrew Comrie; Cécile Viboud
Journal:  PLoS Pathog       Date:  2013-03-07       Impact factor: 6.823

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  77 in total

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Authors:  Velislava N Petrova; Colin A Russell
Journal:  Nat Rev Microbiol       Date:  2017-10-30       Impact factor: 60.633

2.  Anomalous influenza seasonality in the United States and the emergence of novel influenza B viruses.

Authors:  Rebecca K Borchering; Christian E Gunning; Deven V Gokhale; K Bodie Weedop; Arash Saeidpour; Tobias S Brett; Pejman Rohani
Journal:  Proc Natl Acad Sci U S A       Date:  2021-02-02       Impact factor: 11.205

3.  Does influenza drive absolute humidity?

Authors:  Edward B Baskerville; Sarah Cobey
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-15       Impact factor: 11.205

4.  Reply to Baskerville and Cobey: Misconceptions about causation with synchrony and seasonal drivers.

Authors:  George Sugihara; Ethan R Deyle; Hao Ye
Journal:  Proc Natl Acad Sci U S A       Date:  2017-03-15       Impact factor: 11.205

5.  Timing and periodicity of influenza epidemics.

Authors:  Ottar N Bjørnstad; Cecile Viboud
Journal:  Proc Natl Acad Sci U S A       Date:  2016-11-03       Impact factor: 11.205

6.  Seasonal Influenza Activity During the SARS-CoV-2 Outbreak in Japan.

Authors:  Haruka Sakamoto; Masahiro Ishikane; Peter Ueda
Journal:  JAMA       Date:  2020-05-19       Impact factor: 56.272

7.  Livestock plants and COVID-19 transmission.

Authors:  Charles A Taylor; Christopher Boulos; Douglas Almond
Journal:  Proc Natl Acad Sci U S A       Date:  2020-11-19       Impact factor: 11.205

8.  Assessing the predictability of nonlinear dynamics under smooth parameter changes.

Authors:  Simone Cenci; Lucas P Medeiros; George Sugihara; Serguei Saavedra
Journal:  J R Soc Interface       Date:  2020-01-22       Impact factor: 4.118

9.  Seasonal food webs with migrations: multi-season models reveal indirect species interactions in the Canadian Arctic tundra.

Authors:  Chantal Hutchison; Frédéric Guichard; Pierre Legagneux; Gilles Gauthier; Joël Bêty; Dominique Berteaux; Dominique Fauteux; Dominique Gravel
Journal:  Philos Trans A Math Phys Eng Sci       Date:  2020-08-31       Impact factor: 4.226

10.  Cyclic epidemics and extreme outbreaks induced by hydro-climatic variability and memory.

Authors:  Milad Hooshyar; Caroline E Wagner; Rachel E Baker; C Jessica E Metcalf; Bryan T Grenfell; Amilcare Porporato
Journal:  J R Soc Interface       Date:  2020-10-21       Impact factor: 4.118

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