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Literature DB >> 19812562

Experimental aspects of copy number variant assays at CCL3L1.

Sarah F Field, Joanna M M Howson, Lisa M Maier, Susan Walker, Neil M Walker, Deborah J Smyth, John A L Armour, David G Clayton, John A Todd.

Abstract

Entities: Chemical

Mesh：

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Year: 2009 PMID： 19812562 PMCID： PMC2873561 DOI： 10.1038/nm1009-1115

Source DB: PubMed Journal: Nat Med ISSN： 1078-8956 Impact factor: 53.440

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15 in total

1. Inherited resistance to HIV-1 conferred by an inactivating mutation in CC chemokine receptor 5: studies in populations with contrasting clinical phenotypes, defined racial background, and quantified risk.

Authors: P A Zimmerman; A Buckler-White; G Alkhatib; T Spalding; J Kubofcik; C Combadiere; D Weissman; O Cohen; A Rubbert; G Lam; M Vaccarezza; P E Kennedy; V Kumaraswami; J V Giorgi; R Detels; J Hunter; M Chopek; E A Berger; A S Fauci; T B Nutman; P M Murphy
Journal: Mol Med Date: 1997-01 Impact factor: 6.354

2. CCL3L1 and CCL4L1 chemokine genes are located in a segmental duplication at chromosome 17q12.

Authors: William S Modi
Journal: Genomics Date: 2004-04 Impact factor: 5.736

3. Population structure, differential bias and genomic control in a large-scale, case-control association study.

Authors: David G Clayton; Neil M Walker; Deborah J Smyth; Rebecca Pask; Jason D Cooper; Lisa M Maier; Luc J Smink; Alex C Lam; Nigel R Ovington; Helen E Stevens; Sarah Nutland; Joanna M M Howson; Malek Faham; Martin Moorhead; Hywel B Jones; Matthew Falkowski; Paul Hardenbol; Thomas D Willis; John A Todd
Journal: Nat Genet Date: 2005-10-09 Impact factor: 38.330

4. Multiplex Paralogue Ratio Tests for accurate measurement of multiallelic CNVs.

Authors: Susan Walker; Somwang Janyakhantikul; John A L Armour
Journal: Genomics Date: 2008-10-22 Impact factor: 5.736

5. Integrated detection and population-genetic analysis of SNPs and copy number variation.

Authors: Steven A McCarroll; Finny G Kuruvilla; Joshua M Korn; Simon Cawley; James Nemesh; Alec Wysoker; Michael H Shapero; Paul I W de Bakker; Julian B Maller; Andrew Kirby; Amanda L Elliott; Melissa Parkin; Earl Hubbell; Teresa Webster; Rui Mei; James Veitch; Patrick J Collins; Robert Handsaker; Steve Lincoln; Marcia Nizzari; John Blume; Keith W Jones; Rich Rava; Mark J Daly; Stacey B Gabriel; David Altshuler
Journal: Nat Genet Date: 2008-09-07 Impact factor: 38.330

6. The influence of CCL3L1 gene-containing segmental duplications on HIV-1/AIDS susceptibility.

Authors: Enrique Gonzalez; Hemant Kulkarni; Hector Bolivar; Andrea Mangano; Racquel Sanchez; Gabriel Catano; Robert J Nibbs; Barry I Freedman; Marlon P Quinones; Michael J Bamshad; Krishna K Murthy; Brad H Rovin; William Bradley; Robert A Clark; Stephanie A Anderson; Robert J O'connell; Brian K Agan; Seema S Ahuja; Rosa Bologna; Luisa Sen; Matthew J Dolan; Sunil K Ahuja
Journal: Science Date: 2005-01-06 Impact factor: 47.728

7. CCL3L1 and CCL4L1: variable gene copy number in adolescents with and without human immunodeficiency virus type 1 (HIV-1) infection.

Authors: W Shao; J Tang; W Song; C Wang; Y Li; C M Wilson; R A Kaslow
Journal: Genes Immun Date: 2007-03-01 Impact factor: 2.676

8. CCL3L1 and CCR5 influence cell-mediated immunity and affect HIV-AIDS pathogenesis via viral entry-independent mechanisms.

Authors: Matthew J Dolan; Hemant Kulkarni; Jose F Camargo; Weijing He; Alison Smith; Juan-Manuel Anaya; Toshiyuki Miura; Frederick M Hecht; Manju Mamtani; Florencia Pereyra; Vincent Marconi; Andrea Mangano; Luisa Sen; Rosa Bologna; Robert A Clark; Stephanie A Anderson; Judith Delmar; Robert J O'Connell; Andrew Lloyd; Jeffrey Martin; Seema S Ahuja; Brian K Agan; Bruce D Walker; Steven G Deeks; Sunil K Ahuja
Journal: Nat Immunol Date: 2007-10-21 Impact factor: 25.606

9. CCL3L1-CCR5 genotype influences durability of immune recovery during antiretroviral therapy of HIV-1-infected individuals.

Authors: Sunil K Ahuja; Hemant Kulkarni; Gabriel Catano; Brian K Agan; Jose F Camargo; Weijing He; Robert J O'Connell; Vincent C Marconi; Judith Delmar; Joseph Eron; Robert A Clark; Simon Frost; Jeffrey Martin; Seema S Ahuja; Steven G Deeks; Susan Little; Douglas Richman; Frederick M Hecht; Matthew J Dolan
Journal: Nat Med Date: 2008-03-30 Impact factor: 53.440

10. Shared and distinct genetic variants in type 1 diabetes and celiac disease.

Authors: Deborah J Smyth; Vincent Plagnol; Neil M Walker; Jason D Cooper; Kate Downes; Jennie H M Yang; Joanna M M Howson; Helen Stevens; Ross McManus; Cisca Wijmenga; Graham A Heap; Patrick C Dubois; David G Clayton; Karen A Hunt; David A van Heel; John A Todd
Journal: N Engl J Med Date: 2008-12-10 Impact factor: 91.245

36 in total

1. Measurement methods and accuracy in copy number variation: failure to replicate associations of beta-defensin copy number with Crohn's disease.

Authors: Marian C Aldhous; Suhaili Abu Bakar; Natalie J Prescott; Raquel Palla; Kimberley Soo; John C Mansfield; Christopher G Mathew; Jack Satsangi; John A L Armour
Journal: Hum Mol Genet Date: 2010-09-21 Impact factor: 6.150

2. Gene copy number: learning to count past two.

Authors: Sadeep Shrestha; Jianming Tang; Richard A Kaslow
Journal: Nat Med Date: 2009-10 Impact factor: 53.440

3. Reply to: "Experimental aspects of copy number variant assays at CCL3L1".

Authors: Weijing He; Hemant Kulkarni; John Castiblanco; Chisato Shimizu; Una Aluyen; Robert Maldonado; Andrew Carrillo; Madeline Griffin; Amanda Lipsitt; Lisa Beachy; Ludmila Shostakovich-Koretskaya; Andrea Mangano; Luisa Sen; Robert J B Nibbs; Caroline T Tiemessen; Hector Bolivar; Michael J Bamshad; Robert A Clark; Jane C Burns; Matthew J Dolan; Sunil K Ahuja
Journal: Nat Med Date: 2009-10 Impact factor: 53.440

4. Evidence for both copy number and allelic (NA1/NA2) risk at the FCGR3B locus in systemic lupus erythematosus.

Authors: David L Morris; Amy L Roberts; Abigail S Witherden; Ruth Tarzi; Paula Barros; John C Whittaker; Terence H Cook; Timothy J Aitman; Timothy J Vyse
Journal: Eur J Hum Genet Date: 2010-05-05 Impact factor: 4.246

Review 5. Host genes associated with HIV/AIDS: advances in gene discovery.

Authors: Ping An; Cheryl A Winkler
Journal: Trends Genet Date: 2010-02-10 Impact factor: 11.639

6. Characterization of copy number variants for CCL3L1 gene in rheumatoid arthritis for French trio families and Tunisian cases and controls.

Authors: Mohamed Sahbi Ben Kilani; Yosser Achour; Javier Perea; François Cornelis; Thomas Bardin; Valérie Chaudru; Abdellatif Maalej; Elisabeth Petit-Teixeira
Journal: Clin Rheumatol Date: 2016-01-04 Impact factor: 2.980

Review 7. Genetics of type 1 diabetes: what's next?

Authors: Flemming Pociot; Beena Akolkar; Patrick Concannon; Henry A Erlich; Cécile Julier; Grant Morahan; Concepcion R Nierras; John A Todd; Stephen S Rich; Jørn Nerup
Journal: Diabetes Date: 2010-07 Impact factor: 9.461

8. Variations in CCL3L gene cluster sequence and non-specific gene copy numbers.

Authors: Sadeep Shrestha; Mawuli Nyaku; Jeffrey C Edberg
Journal: BMC Res Notes Date: 2010-03-16

9. Contributions of Mamu-A*01 status and TRIM5 allele expression, but not CCL3L copy number variation, to the control of SIVmac251 replication in Indian-origin rhesus monkeys.

Authors: So-Yon Lim; Tiffany Chan; Rebecca S Gelman; James B Whitney; Kara L O'Brien; Dan H Barouch; David B Goldstein; Barton F Haynes; Norman L Letvin
Journal: PLoS Genet Date: 2010-06-24 Impact factor: 5.917

10. Genome-wide association study of CNVs in 16,000 cases of eight common diseases and 3,000 shared controls.

Authors: Nick Craddock; Matthew E Hurles; Niall Cardin; Richard D Pearson; Vincent Plagnol; Samuel Robson; Damjan Vukcevic; Chris Barnes; Donald F Conrad; Eleni Giannoulatou; Chris Holmes; Jonathan L Marchini; Kathy Stirrups; Martin D Tobin; Louise V Wain; Chris Yau; Jan Aerts; Tariq Ahmad; T Daniel Andrews; Hazel Arbury; Anthony Attwood; Adam Auton; Stephen G Ball; Anthony J Balmforth; Jeffrey C Barrett; Inês Barroso; Anne Barton; Amanda J Bennett; Sanjeev Bhaskar; Katarzyna Blaszczyk; John Bowes; Oliver J Brand; Peter S Braund; Francesca Bredin; Gerome Breen; Morris J Brown; Ian N Bruce; Jaswinder Bull; Oliver S Burren; John Burton; Jake Byrnes; Sian Caesar; Chris M Clee; Alison J Coffey; John M C Connell; Jason D Cooper; Anna F Dominiczak; Kate Downes; Hazel E Drummond; Darshna Dudakia; Andrew Dunham; Bernadette Ebbs; Diana Eccles; Sarah Edkins; Cathryn Edwards; Anna Elliot; Paul Emery; David M Evans; Gareth Evans; Steve Eyre; Anne Farmer; I Nicol Ferrier; Lars Feuk; Tomas Fitzgerald; Edward Flynn; Alistair Forbes; Liz Forty; Jayne A Franklyn; Rachel M Freathy; Polly Gibbs; Paul Gilbert; Omer Gokumen; Katherine Gordon-Smith; Emma Gray; Elaine Green; Chris J Groves; Detelina Grozeva; Rhian Gwilliam; Anita Hall; Naomi Hammond; Matt Hardy; Pile Harrison; Neelam Hassanali; Husam Hebaishi; Sarah Hines; Anne Hinks; Graham A Hitman; Lynne Hocking; Eleanor Howard; Philip Howard; Joanna M M Howson; Debbie Hughes; Sarah Hunt; John D Isaacs; Mahim Jain; Derek P Jewell; Toby Johnson; Jennifer D Jolley; Ian R Jones; Lisa A Jones; George Kirov; Cordelia F Langford; Hana Lango-Allen; G Mark Lathrop; James Lee; Kate L Lee; Charlie Lees; Kevin Lewis; Cecilia M Lindgren; Meeta Maisuria-Armer; Julian Maller; John Mansfield; Paul Martin; Dunecan C O Massey; Wendy L McArdle; Peter McGuffin; Kirsten E McLay; Alex Mentzer; Michael L Mimmack; Ann E Morgan; Andrew P Morris; Craig Mowat; Simon Myers; William Newman; Elaine R Nimmo; Michael C O'Donovan; Abiodun Onipinla; Ifejinelo Onyiah; Nigel R Ovington; Michael J Owen; Kimmo Palin; Kirstie Parnell; David Pernet; John R B Perry; Anne Phillips; Dalila Pinto; Natalie J Prescott; Inga Prokopenko; Michael A Quail; Suzanne Rafelt; Nigel W Rayner; Richard Redon; David M Reid; Susan M Ring; Neil Robertson; Ellie Russell; David St Clair; Jennifer G Sambrook; Jeremy D Sanderson; Helen Schuilenburg; Carol E Scott; Richard Scott; Sheila Seal; Sue Shaw-Hawkins; Beverley M Shields; Matthew J Simmonds; Debbie J Smyth; Elilan Somaskantharajah; Katarina Spanova; Sophia Steer; Jonathan Stephens; Helen E Stevens; Millicent A Stone; Zhan Su; Deborah P M Symmons; John R Thompson; Wendy Thomson; Mary E Travers; Clare Turnbull; Armand Valsesia; Mark Walker; Neil M Walker; Chris Wallace; Margaret Warren-Perry; Nicholas A Watkins; John Webster; Michael N Weedon; Anthony G Wilson; Matthew Woodburn; B Paul Wordsworth; Allan H Young; Eleftheria Zeggini; Nigel P Carter; Timothy M Frayling; Charles Lee; Gil McVean; Patricia B Munroe; Aarno Palotie; Stephen J Sawcer; Stephen W Scherer; David P Strachan; Chris Tyler-Smith; Matthew A Brown; Paul R Burton; Mark J Caulfield; Alastair Compston; Martin Farrall; Stephen C L Gough; Alistair S Hall; Andrew T Hattersley; Adrian V S Hill; Christopher G Mathew; Marcus Pembrey; Jack Satsangi; Michael R Stratton; Jane Worthington; Panos Deloukas; Audrey Duncanson; Dominic P Kwiatkowski; Mark I McCarthy; Willem Ouwehand; Miles Parkes; Nazneen Rahman; John A Todd; Nilesh J Samani; Peter Donnelly
Journal: Nature Date: 2010-04-01 Impact factor: 49.962