Literature DB >> 19809668

Optimal construction of a fast and accurate polarisable water potential based on multipole moments trained by machine learning.

Chris M Handley1, Glenn I Hawe, Douglas B Kell, Paul L A Popelier.   

Abstract

To model liquid water correctly and to reproduce its structural, dynamic and thermodynamic properties warrants models that account accurately for electronic polarisation. We have previously demonstrated that polarisation can be represented by fluctuating multipole moments (derived by quantum chemical topology) predicted by multilayer perceptrons (MLPs) in response to the local structure of the cluster. Here we further develop this methodology of modeling polarisation enabling control of the balance between accuracy, in terms of errors in Coulomb energy and computing time. First, the predictive ability and speed of two additional machine learning methods, radial basis function neural networks (RBFNN) and Kriging, are assessed with respect to our previous MLP based polarisable water models, for water dimer, trimer, tetramer, pentamer and hexamer clusters. Compared to MLPs, we find that RBFNNs achieve a 14-26% decrease in median Coulomb energy error, with a factor 2.5-3 slowdown in speed, whilst Kriging achieves a 40-67% decrease in median energy error with a 6.5-8.5 factor slowdown in speed. Then, these compromises between accuracy and speed are improved upon through a simple multi-objective optimisation to identify Pareto-optimal combinations. Compared to the Kriging results, combinations are found that are no less accurate (at the 90th energy error percentile), yet are 58% faster for the dimer, and 26% faster for the pentamer.

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Year:  2009        PMID: 19809668     DOI: 10.1039/b905748j

Source DB:  PubMed          Journal:  Phys Chem Chem Phys        ISSN: 1463-9076            Impact factor:   3.676


  14 in total

1.  The proton momentum distribution in strongly H-bonded phases of water: a critical test of electrostatic models.

Authors:  C J Burnham; T Hayashi; R L Napoleon; T Keyes; S Mukamel; G F Reiter
Journal:  J Chem Phys       Date:  2011-10-14       Impact factor: 3.488

2.  Spherical tensor multipolar electrostatics and smooth particle mesh Ewald summation: a theoretical study.

Authors:  François Zielinski; Paul L A Popelier
Journal:  J Mol Model       Date:  2014-06-24       Impact factor: 1.810

3.  Multipolar electrostatics based on the Kriging machine learning method: an application to serine.

Authors:  Yongna Yuan; Matthew J L Mills; Paul L A Popelier
Journal:  J Mol Model       Date:  2014-03-16       Impact factor: 1.810

4.  Molecular Dynamics Simulations with Quantum Mechanics/Molecular Mechanics and Adaptive Neural Networks.

Authors:  Lin Shen; Weitao Yang
Journal:  J Chem Theory Comput       Date:  2018-02-26       Impact factor: 6.006

5.  Non-covalent interactions from a Quantum Chemical Topology perspective.

Authors:  Paul L A Popelier
Journal:  J Mol Model       Date:  2022-08-25       Impact factor: 2.172

6.  Machine learning estimates of natural product conformational energies.

Authors:  Matthias Rupp; Matthias R Bauer; Rainer Wilcken; Andreas Lange; Michael Reutlinger; Frank M Boeckler; Gisbert Schneider
Journal:  PLoS Comput Biol       Date:  2014-01-16       Impact factor: 4.475

7.  Multipolar Ewald methods, 1: theory, accuracy, and performance.

Authors:  Timothy J Giese; Maria T Panteva; Haoyuan Chen; Darrin M York
Journal:  J Chem Theory Comput       Date:  2015-02-10       Impact factor: 6.006

8.  Incorporation of local structure into kriging models for the prediction of atomistic properties in the water decamer.

Authors:  Stuart J Davie; Nicodemo Di Pasquale; Paul L A Popelier
Journal:  J Comput Chem       Date:  2016-08-18       Impact factor: 3.376

9.  Realistic sampling of amino acid geometries for a multipolar polarizable force field.

Authors:  Timothy J Hughes; Salvatore Cardamone; Paul L A Popelier
Journal:  J Comput Chem       Date:  2015-08-03       Impact factor: 3.376

10.  Prediction of conformationally dependent atomic multipole moments in carbohydrates.

Authors:  Salvatore Cardamone; Paul L A Popelier
Journal:  J Comput Chem       Date:  2015-11-08       Impact factor: 3.376

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