Literature DB >> 19805079

The human insulin gene is part of a large open chromatin domain specific for human islets.

Vesco Mutskov1, Gary Felsenfeld.   

Abstract

Knowledge of how insulin (INS) gene expression is regulated will lead to better understanding of normal and abnormal pancreatic beta cell function. We have mapped histone modifications over the INS region, coupled with an expression profile, in freshly isolated islets from multiple human donors. Unlike many other human genes, in which active modifications tend to be concentrated within 1 kb around the transcription start site, these marks are distributed over the entire coding region of INS as well. Moreover, a region of approximately 80 kb around the INS gene, which contains the {tyrosine hydroxylase (TH)-(INS)-insulin-like growth factor 2 antisense (IGF2AS)-insulin-like growth factor 2 (IGF2)} gene cluster, unusually is marked by almost uniformly elevated levels of histone acetylation and H3K4 dimethylation, extending both downstream into IGF2 and upstream beyond the TH gene. This is accompanied by islet specific coordinate expression with INS of the neighboring TH and IGF2 genes. The presence of islet specific intergenic transcripts suggests their possible function in the maintenance of this unusual large open chromatin domain.

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Year:  2009        PMID: 19805079      PMCID: PMC2765094          DOI: 10.1073/pnas.0909288106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  34 in total

1.  Intergenic transcription and developmental remodeling of chromatin subdomains in the human beta-globin locus.

Authors:  J Gribnau; K Diderich; S Pruzina; R Calzolari; P Fraser
Journal:  Mol Cell       Date:  2000-02       Impact factor: 17.970

Review 2.  Regulation of insulin gene transcription.

Authors:  D Melloul; S Marshak; E Cerasi
Journal:  Diabetologia       Date:  2002-03       Impact factor: 10.122

3.  Clustering of housekeeping genes provides a unified model of gene order in the human genome.

Authors:  Martin J Lercher; Araxi O Urrutia; Laurence D Hurst
Journal:  Nat Genet       Date:  2002-05-06       Impact factor: 38.330

4.  Covalent histone modifications underlie the developmental regulation of insulin gene transcription in pancreatic beta cells.

Authors:  Swarup K Chakrabarti; Joshua Francis; Suzanne M Ziesmann; James C Garmey; Raghavendra G Mirmira
Journal:  J Biol Chem       Date:  2003-04-23       Impact factor: 5.157

5.  The barrier function of an insulator couples high histone acetylation levels with specific protection of promoter DNA from methylation.

Authors:  Vesco J Mutskov; Catherine M Farrell; Paul A Wade; Alan P Wolffe; Gary Felsenfeld
Journal:  Genes Dev       Date:  2002-06-15       Impact factor: 11.361

6.  The human transcriptome map: clustering of highly expressed genes in chromosomal domains.

Authors:  H Caron; B van Schaik ; M van der Mee ; F Baas; G Riggins; P van Sluis ; M C Hermus; R van Asperen ; K Boon; P A Voûte; S Heisterkamp; A van Kampen ; R Versteeg
Journal:  Science       Date:  2001-02-16       Impact factor: 47.728

7.  Glucose regulates insulin gene transcription by hyperacetylation of histone h4.

Authors:  Amber L Mosley; Sabire Ozcan
Journal:  J Biol Chem       Date:  2003-03-28       Impact factor: 5.157

Review 8.  The fundamental role of epigenetic events in cancer.

Authors:  Peter A Jones; Stephen B Baylin
Journal:  Nat Rev Genet       Date:  2002-06       Impact factor: 53.242

9.  Stepwise chromatin remodelling by a cascade of transcription initiation of non-coding RNAs.

Authors:  Kouji Hirota; Tomoichiro Miyoshi; Kazuto Kugou; Charles S Hoffman; Takehiko Shibata; Kunihiro Ohta
Journal:  Nature       Date:  2008-09-28       Impact factor: 49.962

10.  Active genes are tri-methylated at K4 of histone H3.

Authors:  Helena Santos-Rosa; Robert Schneider; Andrew J Bannister; Julia Sherriff; Bradley E Bernstein; N C Tolga Emre; Stuart L Schreiber; Jane Mellor; Tony Kouzarides
Journal:  Nature       Date:  2002-09-11       Impact factor: 49.962

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  27 in total

Review 1.  Transcriptional Regulation of the Pancreatic Islet: Implications for Islet Function.

Authors:  Michael L Stitzel; Ina Kycia; Romy Kursawe; Duygu Ucar
Journal:  Curr Diab Rep       Date:  2015-09       Impact factor: 4.810

2.  Global epigenomic analysis of primary human pancreatic islets provides insights into type 2 diabetes susceptibility loci.

Authors:  Michael L Stitzel; Praveen Sethupathy; Daniel S Pearson; Peter S Chines; Lingyun Song; Michael R Erdos; Ryan Welch; Stephen C J Parker; Alan P Boyle; Laura J Scott; Elliott H Margulies; Michael Boehnke; Terrence S Furey; Gregory E Crawford; Francis S Collins
Journal:  Cell Metab       Date:  2010-11-03       Impact factor: 27.287

3.  Chromatin stretch enhancer states drive cell-specific gene regulation and harbor human disease risk variants.

Authors:  Stephen C J Parker; Michael L Stitzel; D Leland Taylor; Jose Miguel Orozco; Michael R Erdos; Jennifer A Akiyama; Kelly Lammerts van Bueren; Peter S Chines; Narisu Narisu; Brian L Black; Axel Visel; Len A Pennacchio; Francis S Collins
Journal:  Proc Natl Acad Sci U S A       Date:  2013-10-14       Impact factor: 11.205

4.  Early-life physical activity reverses metabolic and Foxo1 epigenetic misregulation induced by gestational sleep disturbance.

Authors:  Vesco Mutskov; Abdelnaby Khalyfa; Yang Wang; Alba Carreras; Marcelo A Nobrega; David Gozal
Journal:  Am J Physiol Regul Integr Comp Physiol       Date:  2015-01-07       Impact factor: 3.619

Review 5.  Epigenetic modifications in the pathogenesis of diabetic nephropathy.

Authors:  Marpadga A Reddy; Jung Tak Park; Rama Natarajan
Journal:  Semin Nephrol       Date:  2013-07       Impact factor: 5.299

Review 6.  Translational implications of the β-cell epigenome in diabetes mellitus.

Authors:  Justin S Johnson; Carmella Evans-Molina
Journal:  Transl Res       Date:  2014-03-12       Impact factor: 7.012

7.  Deconstructing pancreas development to reconstruct human islets from pluripotent stem cells.

Authors:  Kristen D McKnight; Pei Wang; Seung K Kim
Journal:  Cell Stem Cell       Date:  2010-04-02       Impact factor: 24.633

8.  Reprogramming adult human dermal fibroblasts to islet-like cells by epigenetic modification coupled to transcription factor modulation.

Authors:  Liora S Katz; Elizabeth Geras-Raaka; Marvin C Gershengorn
Journal:  Stem Cells Dev       Date:  2013-06-04       Impact factor: 3.272

9.  Genome-wide analysis of histone modifications in human pancreatic islets.

Authors:  Reena Bhandare; Jonathan Schug; John Le Lay; Alan Fox; Olga Smirnova; Chengyang Liu; Ali Naji; Klaus H Kaestner
Journal:  Genome Res       Date:  2010-02-24       Impact factor: 9.043

10.  Transcription factor ZBED6 affects gene expression, proliferation, and cell death in pancreatic beta cells.

Authors:  Xuan Wang; Lin Jiang; Ola Wallerman; Ulla Engström; Adam Ameur; Rajesh Kumar Gupta; Yu Qi; Leif Andersson; Nils Welsh
Journal:  Proc Natl Acad Sci U S A       Date:  2013-09-16       Impact factor: 11.205

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