Literature DB >> 19802588

miRNA Target Prediction in Plants.

Noah Fahlgren1, James C Carrington.   

Abstract

In plants, miRNA bind to target RNAs with a high degree of complementarity. In this chapter, a simple method for computationally predicting plant miRNA targets, using a position-dependent scoring system, is described.

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Year:  2010        PMID： 19802588     DOI： 10.1007/978-1-60327-005-2_4

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN： 1064-3745


  93 in total

1.  MicroRNA profiles and their control of male gametophyte development in rice.

Authors:  Hua Peng; Jun Chun; Tao-bo Ai; Yong-ao Tong; Rong Zhang; Ming-ming Zhao; Fang Chen; Sheng-hua Wang
Journal:  Plant Mol Biol       Date:  2012-03-09       Impact factor: 4.076

2.  Comparative Transcriptome Analysis Reveals New lncRNAs Responding to Salt Stress in Sweet Sorghum.

Authors:  Xi Sun; Hongxiang Zheng; Jinlu Li; Luning Liu; Xiansheng Zhang; Na Sui
Journal:  Front Bioeng Biotechnol       Date:  2020-04-15

Review 3.  Biogenesis, turnover, and mode of action of plant microRNAs.

Authors:  Kestrel Rogers; Xuemei Chen
Journal:  Plant Cell       Date:  2013-07-23       Impact factor: 11.277

4.  microRNAs differentially modulated in response to heat and drought stress in durum wheat cultivars with contrasting water use efficiency.

Authors:  Lorenzo Giusti; Erica Mica; Edoardo Bertolini; Anna Maria De Leonardis; Primetta Faccioli; Luigi Cattivelli; Cristina Crosatti
Journal:  Funct Integr Genomics       Date:  2016-10-12       Impact factor: 3.410

5.  StarScan: a web server for scanning small RNA targets from degradome sequencing data.

Authors:  Shun Liu; Jun-Hao Li; Jie Wu; Ke-Ren Zhou; Hui Zhou; Jian-Hua Yang; Liang-Hu Qu
Journal:  Nucleic Acids Res       Date:  2015-05-18       Impact factor: 16.971

6.  MicroRNA-like RNAs in plant pathogenic fungus Fusarium oxysporum f. sp. niveum are involved in toxin gene expression fine tuning.

Authors:  Xuefei Jiang; Fei Qiao; Yali Long; Hanqing Cong; Huapeng Sun
Journal:  3 Biotech       Date:  2017-09-27       Impact factor: 2.406

7.  TarHunter, a tool for predicting conserved microRNA targets and target mimics in plants.

Authors:  Xuan Ma; Chunyan Liu; Lianfeng Gu; Beixin Mo; Xiaofeng Cao; Xuemei Chen
Journal:  Bioinformatics       Date:  2018-05-01       Impact factor: 6.937

8.  MicroRNAs prevent precocious gene expression and enable pattern formation during plant embryogenesis.

Authors:  Michael D Nodine; David P Bartel
Journal:  Genes Dev       Date:  2010-12-01       Impact factor: 11.361

9.  How sequence variants of a plastid-replicating viroid with one single nucleotide change initiate disease in its natural host.

Authors:  Sonia Delgado; Beatriz Navarro; Pedro Serra; Pascal Gentit; Miguel-Ángel Cambra; Michela Chiumenti; Angelo De Stradis; Francesco Di Serio; Ricardo Flores
Journal:  RNA Biol       Date:  2019-04-16       Impact factor: 4.652

10.  siRNAs from miRNA sites mediate DNA methylation of target genes.

Authors:  Padmanabhan Chellappan; Jing Xia; Xuefeng Zhou; Shang Gao; Xiaoming Zhang; Gabriela Coutino; Franck Vazquez; Weixiong Zhang; Hailing Jin
Journal:  Nucleic Acids Res       Date:  2010-07-09       Impact factor: 16.971
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