Literature DB >> 19802362

A Two-Stage Approach for Semilinear In-Slide Models.

Jinhong You1, Haibo Zhou.   

Abstract

The semilinear in-slide models (SLIMs) have been shown to be effective method for normalizing microarray data (Fan, et al. 2004). Using a backfitting method, Fan, Peng and Huang (2005) proposed a profile least squares (PLS) estimation for the parametric and nonparametric components. The general asymptotic properties for their estimator is not developed. In this paper, we consider a new approach, two-stage estimation, which enables us to establish the asymptotic normalities for both of the parametric and nonparametric component estimators. We further propose a plug-in bandwidth selector using the asymptotic normality of the nonparametric component estimator. The proposed method allow for the modeling of the aggregated SLIMs case where we can explicitly show that taking the aggregated information into account can improve both of the parametric and nonparametric component estimator by the proposed two-stage approach. Some simulation studies are conducted to illustrate the finite sample performance of the proposed procedures.

Entities:  

Year:  2008        PMID: 19802362      PMCID: PMC2756113          DOI: 10.1016/j.jmva.2008.01.013

Source DB:  PubMed          Journal:  J Multivar Anal        ISSN: 0047-259X            Impact factor:   1.473


  10 in total

1.  Case-parents design for gene-environment interaction.

Authors:  D J Schaid
Journal:  Genet Epidemiol       Date:  1999       Impact factor: 2.135

2.  Issues in cDNA microarray analysis: quality filtering, channel normalization, models of variations and assessment of gene effects.

Authors:  G C Tseng; M K Oh; L Rohlin; J C Liao; W H Wong
Journal:  Nucleic Acids Res       Date:  2001-06-15       Impact factor: 16.971

3.  Normalization for cDNA microarray data: a robust composite method addressing single and multiple slide systematic variation.

Authors:  Yee Hwa Yang; Sandrine Dudoit; Percy Luu; David M Lin; Vivian Peng; John Ngai; Terence P Speed
Journal:  Nucleic Acids Res       Date:  2002-02-15       Impact factor: 16.971

4.  Ranking: a closer look on globalisation methods for normalisation of gene expression arrays.

Authors:  Torsten C Kroll; Stefan Wölfl
Journal:  Nucleic Acids Res       Date:  2002-06-01       Impact factor: 16.971

Review 5.  Exploring the new world of the genome with DNA microarrays.

Authors:  P O Brown; D Botstein
Journal:  Nat Genet       Date:  1999-01       Impact factor: 38.330

6.  Gene-expression profiles in hereditary breast cancer.

Authors:  I Hedenfalk; D Duggan; Y Chen; M Radmacher; M Bittner; R Simon; P Meltzer; B Gusterson; M Esteller; O P Kallioniemi; B Wilfond; A Borg; J Trent; M Raffeld; Z Yakhini; A Ben-Dor; E Dougherty; J Kononen; L Bubendorf; W Fehrle; S Pittaluga; S Gruvberger; N Loman; O Johannsson; H Olsson; G Sauter
Journal:  N Engl J Med       Date:  2001-02-22       Impact factor: 91.245

7.  Quantitative monitoring of gene expression patterns with a complementary DNA microarray.

Authors:  M Schena; D Shalon; R W Davis; P O Brown
Journal:  Science       Date:  1995-10-20       Impact factor: 47.728

8.  Distinct types of diffuse large B-cell lymphoma identified by gene expression profiling.

Authors:  A A Alizadeh; M B Eisen; R E Davis; C Ma; I S Lossos; A Rosenwald; J C Boldrick; H Sabet; T Tran; X Yu; J I Powell; L Yang; G E Marti; T Moore; J Hudson; L Lu; D B Lewis; R Tibshirani; G Sherlock; W C Chan; T C Greiner; D D Weisenburger; J O Armitage; R Warnke; R Levy; W Wilson; M R Grever; J C Byrd; D Botstein; P O Brown; L M Staudt
Journal:  Nature       Date:  2000-02-03       Impact factor: 49.962

9.  Molecular classification of cancer: class discovery and class prediction by gene expression monitoring.

Authors:  T R Golub; D K Slonim; P Tamayo; C Huard; M Gaasenbeek; J P Mesirov; H Coller; M L Loh; J R Downing; M A Caligiuri; C D Bloomfield; E S Lander
Journal:  Science       Date:  1999-10-15       Impact factor: 47.728

10.  Normalization and analysis of cDNA microarrays using within-array replications applied to neuroblastoma cell response to a cytokine.

Authors:  Jianqing Fan; Paul Tam; George Vande Woude; Yi Ren
Journal:  Proc Natl Acad Sci U S A       Date:  2004-01-22       Impact factor: 11.205

  10 in total

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