Literature DB >> 19801463

Development and application of quantitative-PCR tools for subgroups of the Roseobacter clade.

Alison Buchan1, Mary Hadden, Marcelino T Suzuki.   

Abstract

Specific SYBR green-based quantitative-PCR assays targeting conserved regions in the 16S-23S rRNA internal transcribed spacer regions were developed for five subgroups of the environmentally abundant and biogeochemically active Roseobacter clade of marine bacteria. The assays were applied to field samples demonstrating their utility in investigations of abundant Roseobacter group phylotypes in the environment.

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Year:  2009        PMID： 19801463      PMCID： PMC2786420          DOI： 10.1128/AEM.00814-09

Source DB:  PubMed          Journal:  Appl Environ Microbiol        ISSN： 0099-2240            Impact factor:   4.792


  21 in total

1.  Automated approach for ribosomal intergenic spacer analysis of microbial diversity and its application to freshwater bacterial communities.

Authors:  M M Fisher; E W Triplett
Journal:  Appl Environ Microbiol       Date:  1999-10       Impact factor: 4.792

2.  A newly discovered Roseobacter cluster in temperate and polar oceans.

Authors:  Natascha Selje; Meinhard Simon; Thorsten Brinkhoff
Journal:  Nature       Date:  2004-01-29       Impact factor: 49.962

3.  ARB: a software environment for sequence data.

Authors:  Wolfgang Ludwig; Oliver Strunk; Ralf Westram; Lothar Richter; Harald Meier; Arno Buchner; Tina Lai; Susanne Steppi; Gangolf Jobb; Wolfram Förster; Igor Brettske; Stefan Gerber; Anton W Ginhart; Oliver Gross; Silke Grumann; Stefan Hermann; Ralf Jost; Andreas König; Thomas Liss; Ralph Lüssmann; Michael May; Björn Nonhoff; Boris Reichel; Robert Strehlow; Alexandros Stamatakis; Norbert Stuckmann; Alexander Vilbig; Michael Lenke; Thomas Ludwig; Arndt Bode; Karl-Heinz Schleifer
Journal:  Nucleic Acids Res       Date:  2004-02-25       Impact factor: 16.971

4.  Genome sequence of Silicibacter pomeroyi reveals adaptations to the marine environment.

Authors:  Mary Ann Moran; Alison Buchan; José M González; John F Heidelberg; William B Whitman; Ronald P Kiene; James R Henriksen; Gary M King; Robert Belas; Clay Fuqua; Lauren Brinkac; Matt Lewis; Shivani Johri; Bruce Weaver; Grace Pai; Jonathan A Eisen; Elisha Rahe; Wade M Sheldon; Wenying Ye; Todd R Miller; Jane Carlton; David A Rasko; Ian T Paulsen; Qinghu Ren; Sean C Daugherty; Robert T Deboy; Robert J Dodson; A Scott Durkin; Ramana Madupu; William C Nelson; Steven A Sullivan; M J Rosovitz; Daniel H Haft; Jeremy Selengut; Naomi Ward
Journal:  Nature       Date:  2004-12-16       Impact factor: 49.962

5.  Phylogenetic screening of ribosomal RNA gene-containing clones in Bacterial Artificial Chromosome (BAC) libraries from different depths in Monterey Bay.

Authors:  M T Suzuki; C M Preston; O Béjà; J R de la Torre; G F Steward; E F DeLong
Journal:  Microb Ecol       Date:  2004-10-14       Impact factor: 4.552

Review 6.  Overview of the marine roseobacter lineage.

Authors:  Alison Buchan; José M González; Mary Ann Moran
Journal:  Appl Environ Microbiol       Date:  2005-10       Impact factor: 4.792

Review 7.  Environmental biology of the marine Roseobacter lineage.

Authors:  Irene Wagner-Döbler; Hanno Biebl
Journal:  Annu Rev Microbiol       Date:  2006       Impact factor: 15.500

8.  Measurement of Prochlorococcus ecotypes using real-time polymerase chain reaction reveals different abundances of genotypes with similar light physiologies.

Authors:  Nathan A Ahlgren; Gabrielle Rocap; Sallie W Chisholm
Journal:  Environ Microbiol       Date:  2006-03       Impact factor: 5.491

9.  Quantification of low-copy transcripts by continuous SYBR Green I monitoring during amplification.

Authors:  T B Morrison; J J Weis; C T Wittwer
Journal:  Biotechniques       Date:  1998-06       Impact factor: 1.993

10.  Identifying numerically abundant culturable bacteria from complex communities: an example from a lignin enrichment culture.

Authors:  J M González; W B Whitman; R E Hodson; M A Moran
Journal:  Appl Environ Microbiol       Date:  1996-12       Impact factor: 4.792
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  7 in total

1.  Molecular enumeration of an ecologically important cyanophage in a Laurentian Great Lake.

Authors:  Audrey R Matteson; Star N Loar; Richard A Bourbonniere; Steven W Wilhelm
Journal:  Appl Environ Microbiol       Date:  2011-08-12       Impact factor: 4.792

Review 2.  Master recyclers: features and functions of bacteria associated with phytoplankton blooms.

Authors:  Alison Buchan; Gary R LeCleir; Christopher A Gulvik; José M González
Journal:  Nat Rev Microbiol       Date:  2014-08-19       Impact factor: 60.633

3.  Biogeography and environmental genomics of the Roseobacter-affiliated pelagic CHAB-I-5 lineage.

Authors:  Sara Billerbeck; Bernd Wemheuer; Sonja Voget; Anja Poehlein; Helge-Ansgar Giebel; Thorsten Brinkhoff; Lone Gram; Wade H Jeffrey; Rolf Daniel; Meinhard Simon
Journal:  Nat Microbiol       Date:  2016-05-16       Impact factor: 17.745

4.  Measuring the absolute abundance of the microbiome by adding yeast containing 16S rRNA gene from a hyperthermophile.

Authors:  Ju Yeong Kim; Myung-Hee Yi; Myungjun Kim; Seogwon Lee; Hye Su Moon; Dongeun Yong; Tai-Soon Yong
Journal:  Microbiologyopen       Date:  2021-08       Impact factor: 3.139

5.  Thymic development of gut-microbiota-specific T cells.

Authors:  Daniel F Zegarra-Ruiz; Dasom V Kim; Kendra Norwood; Myunghoo Kim; Wan-Jung H Wu; Fatima B Saldana-Morales; Andrea A Hill; Shubhabrata Majumdar; Stephanie Orozco; Rickesha Bell; June L Round; Randy S Longman; Takeshi Egawa; Matthew L Bettini; Gretchen E Diehl
Journal:  Nature       Date:  2021-05-12       Impact factor: 49.962

6.  Microbiota manipulation to increase macrophage IL-10 improves colitis and limits colitis-associated colorectal cancer.

Authors:  Daniel F Zegarra Ruiz; Dasom V Kim; Kendra Norwood; Fatima B Saldana-Morales; Myunghoo Kim; Charles Ng; Ryann Callaghan; Maisha Uddin; Lin-Chun Chang; Randy S Longman; Gretchen E Diehl
Journal:  Gut Microbes       Date:  2022 Jan-Dec

7.  Mechanisms driving genome reduction of a novel Roseobacter lineage.

Authors:  Xiaoyuan Feng; Xiao Chu; Yang Qian; Michael W Henson; V Celeste Lanclos; Fang Qin; Shelby Barnes; Yanlin Zhao; J Cameron Thrash; Haiwei Luo
Journal:  ISME J       Date:  2021-06-18       Impact factor: 10.302
  7 in total

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