Literature DB >> 19793573

Genome-wide association studies and colorectal cancer.

Loïc Le Marchand1.   

Abstract

Genome-wide association studies (GWAS) provide a powerful new approach to identify common, low-penetrance susceptibility loci without prior knowledge of biologic function. Results from three GWAS conducted in populations of European ancestry are available for colorectal cancer (CRC). These studies have identified 11 disease loci that, for the majority, were not previously suspected to be related to CRC. The proportions of the familial and population risks explained by these loci are small and they currently are not useful for risk prediction. However, the power of these studies was low, indicating that a number of other loci may be identified in new ongoing GWAS, and in pooled analyses. Thus, the risk prediction ability of susceptibility markers identified in GWAS for CRC may improve as more variants are discovered. This may, in turn, have important implications for targeting high-risk individuals for colonoscopy screening.

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Year:  2009        PMID: 19793573      PMCID: PMC2756243          DOI: 10.1016/j.soc.2009.07.004

Source DB:  PubMed          Journal:  Surg Oncol Clin N Am        ISSN: 1055-3207            Impact factor:   3.495


  22 in total

1.  Variation is the spice of life.

Authors:  L Kruglyak; D A Nickerson
Journal:  Nat Genet       Date:  2001-03       Impact factor: 38.330

2.  The structure of haplotype blocks in the human genome.

Authors:  Stacey B Gabriel; Stephen F Schaffner; Huy Nguyen; Jamie M Moore; Jessica Roy; Brendan Blumenstiel; John Higgins; Matthew DeFelice; Amy Lochner; Maura Faggart; Shau Neen Liu-Cordero; Charles Rotimi; Adebowale Adeyemo; Richard Cooper; Ryk Ward; Eric S Lander; Mark J Daly; David Altshuler
Journal:  Science       Date:  2002-05-23       Impact factor: 47.728

3.  A common variant associated with prostate cancer in European and African populations.

Authors:  Laufey T Amundadottir; Patrick Sulem; Julius Gudmundsson; Agnar Helgason; Adam Baker; Bjarni A Agnarsson; Asgeir Sigurdsson; Kristrun R Benediktsdottir; Jean-Baptiste Cazier; Jesus Sainz; Margret Jakobsdottir; Jelena Kostic; Droplaug N Magnusdottir; Shyamali Ghosh; Kari Agnarsson; Birgitta Birgisdottir; Louise Le Roux; Adalheidur Olafsdottir; Thorarinn Blondal; Margret Andresdottir; Olafia Svandis Gretarsdottir; Jon T Bergthorsson; Daniel Gudbjartsson; Arnaldur Gylfason; Gudmar Thorleifsson; Andrei Manolescu; Kristleifur Kristjansson; Gudmundur Geirsson; Helgi Isaksson; Julie Douglas; Jan-Erik Johansson; Katarina Bälter; Fredrik Wiklund; James E Montie; Xiaoying Yu; Brian K Suarez; Carole Ober; Kathleen A Cooney; Henrik Gronberg; William J Catalona; Gudmundur V Einarsson; Rosa B Barkardottir; Jeffrey R Gulcher; Augustine Kong; Unnur Thorsteinsdottir; Kari Stefansson
Journal:  Nat Genet       Date:  2006-05-07       Impact factor: 38.330

4.  Admixture mapping identifies 8q24 as a prostate cancer risk locus in African-American men.

Authors:  Matthew L Freedman; Christopher A Haiman; Nick Patterson; Gavin J McDonald; Arti Tandon; Alicja Waliszewska; Kathryn Penney; Robert G Steen; Kristin Ardlie; Esther M John; Ingrid Oakley-Girvan; Alice S Whittemore; Kathleen A Cooney; Sue A Ingles; David Altshuler; Brian E Henderson; David Reich
Journal:  Proc Natl Acad Sci U S A       Date:  2006-08-31       Impact factor: 11.205

5.  Multiple regions within 8q24 independently affect risk for prostate cancer.

Authors:  Christopher A Haiman; Nick Patterson; Matthew L Freedman; Simon R Myers; Malcolm C Pike; Alicja Waliszewska; Julie Neubauer; Arti Tandon; Christine Schirmer; Gavin J McDonald; Steven C Greenway; Daniel O Stram; Loic Le Marchand; Laurence N Kolonel; Melissa Frasco; David Wong; Loreall C Pooler; Kristin Ardlie; Ingrid Oakley-Girvan; Alice S Whittemore; Kathleen A Cooney; Esther M John; Sue A Ingles; David Altshuler; Brian E Henderson; David Reich
Journal:  Nat Genet       Date:  2007-04-01       Impact factor: 38.330

6.  Combined influence of genetic and dietary factors on colorectal cancer incidence in Japanese Americans.

Authors:  L L Marchand
Journal:  J Natl Cancer Inst Monogr       Date:  1999

7.  Environmental and heritable factors in the causation of cancer--analyses of cohorts of twins from Sweden, Denmark, and Finland.

Authors:  P Lichtenstein; N V Holm; P K Verkasalo; A Iliadou; J Kaprio; M Koskenvuo; E Pukkala; A Skytthe; K Hemminki
Journal:  N Engl J Med       Date:  2000-07-13       Impact factor: 91.245

Review 8.  Genetics of colon cancer: impact of inheritance on colon cancer risk.

Authors:  R W Burt; J A DiSario; L Cannon-Albright
Journal:  Annu Rev Med       Date:  1995       Impact factor: 13.739

9.  Meta-analysis of genome-wide association data identifies four new susceptibility loci for colorectal cancer.

Authors:  Richard S Houlston; Emily Webb; Peter Broderick; Alan M Pittman; Maria Chiara Di Bernardo; Steven Lubbe; Ian Chandler; Jayaram Vijayakrishnan; Kate Sullivan; Steven Penegar; Luis Carvajal-Carmona; Kimberley Howarth; Emma Jaeger; Sarah L Spain; Axel Walther; Ella Barclay; Lynn Martin; Maggie Gorman; Enric Domingo; Ana S Teixeira; David Kerr; Jean-Baptiste Cazier; Iina Niittymäki; Sari Tuupanen; Auli Karhu; Lauri A Aaltonen; Ian P M Tomlinson; Susan M Farrington; Albert Tenesa; James G D Prendergast; Rebecca A Barnetson; Roseanne Cetnarskyj; Mary E Porteous; Paul D P Pharoah; Thibaud Koessler; Jochen Hampe; Stephan Buch; Clemens Schafmayer; Jurgen Tepel; Stefan Schreiber; Henry Völzke; Jenny Chang-Claude; Michael Hoffmeister; Hermann Brenner; Brent W Zanke; Alexandre Montpetit; Thomas J Hudson; Steven Gallinger; Harry Campbell; Malcolm G Dunlop
Journal:  Nat Genet       Date:  2008-11-16       Impact factor: 38.330

10.  Two-stage two-locus models in genome-wide association.

Authors:  David M Evans; Jonathan Marchini; Andrew P Morris; Lon R Cardon
Journal:  PLoS Genet       Date:  2006-09-22       Impact factor: 5.917

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  13 in total

Review 1.  Two DNA repair gene polymorphisms on the risk of gastrointestinal cancers: a meta-analysis.

Authors:  Yue Hu; Min Zhou; Kang Li; Kai Zhang; Xiangquan Kong; Yamei Zheng; Jianxu Li; Li Liu
Journal:  Tumour Biol       Date:  2013-11-08

2.  Association of colorectal cancer susceptibility variants with esophageal cancer in a Chinese population.

Authors:  Ting-Ting Geng; Xiao-Jie Xun; Sen Li; Tian Feng; Li-Ping Wang; Tian-Bo Jin; Peng Hou
Journal:  World J Gastroenterol       Date:  2015-06-14       Impact factor: 5.742

3.  Polymorphisms in the DUSP10 gene are associated with sex-specific colorectal cancer risk in a Han population.

Authors:  Xianglong Duan; Ya Gao; Hua Yang; Tian Feng; Tianbo Jin; Yanbin Long; Chao Chen
Journal:  Int J Clin Exp Pathol       Date:  2015-02-01

4.  The insertion/deletion (I/D) polymorphism in the Angiotensin-converting enzyme gene and cancer risk: a meta-analysis.

Authors:  Yonggang Zhang; Jie He; Yao Deng; Jie Zhang; Xiaobo Li; Zhangpeng Xiang; Honglang Huang; Can Tian; Jin Huang; Hong Fan
Journal:  BMC Med Genet       Date:  2011-12-12       Impact factor: 2.103

5.  Calling amplified haplotypes in next generation tumor sequence data.

Authors:  Ninad Dewal; Yang Hu; Matthew L Freedman; Thomas Laframboise; Itsik Pe'er
Journal:  Genome Res       Date:  2011-11-16       Impact factor: 9.043

6.  Genome-wide investigation of gene-environment interactions in colorectal cancer.

Authors:  Sabine Siegert; Jochen Hampe; Clemens Schafmayer; Witigo von Schönfels; Jan-Hendrik Egberts; Asta Försti; Bowang Chen; Jesús Lascorz; Kari Hemminki; Andre Franke; Michael Nothnagel; Ute Nöthlings; Michael Krawczak
Journal:  Hum Genet       Date:  2012-11-02       Impact factor: 4.132

7.  Correlation of Asp299Gly and Thr399Ile polymorphisms in toll-like receptor 4 gene with digestive cancer risk: A meta-analysis.

Authors:  Xinxin Zhao; Shan Kang; Lingling Liu; Dongfeng Zhang
Journal:  Biomed Rep       Date:  2012-10-29

Review 8.  Drug repurposing in oncology: Compounds, pathways, phenotypes and computational approaches for colorectal cancer.

Authors:  Patrycja Nowak-Sliwinska; Leonardo Scapozza; Ariel Ruiz i Altaba
Journal:  Biochim Biophys Acta Rev Cancer       Date:  2019-04-26       Impact factor: 10.680

9.  Replication study of SNP associations for colorectal cancer in Hong Kong Chinese.

Authors:  J W Ho; S-c Choi; Y-f Lee; T C Hui; S S Cherny; M-M Garcia-Barceló; L Carvajal-Carmona; R Liu; S-h To; T-k Yau; C C Chung; C C Yau; S M Hui; P Y Lau; C-h Yuen; Y-w Wong; S Ho; S S Fung; I P Tomlinson; R S Houlston; K K Cheng; P C Sham
Journal:  Br J Cancer       Date:  2010-12-21       Impact factor: 7.640

10.  A functional NQO1 609C>T polymorphism and risk of gastrointestinal cancers: a meta-analysis.

Authors:  Hongping Yu; Hongliang Liu; Li-E Wang; Qingyi Wei
Journal:  PLoS One       Date:  2012-01-17       Impact factor: 3.240

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