Literature DB >> 19789923

Isolation and characterization of a GDSL esterase from the metagenome of a marine sponge-associated bacteria.

Yoshiko Okamura1, Tomonori Kimura, Hiroko Yokouchi, Macarena Meneses-Osorio, Masaya Katoh, Tadashi Matsunaga, Haruko Takeyama.   

Abstract

Using a metagenome library constructed from a bacterial associated with a marine sponge Hyrtios erecta, we identified a novel esterase that belongs to the SGNH hydrolase superfamily of esterases. The substrate specificity of EstHE1 was determined using p-nitrophenyl (pNP) ester (C2: acetate, C4: butylate, C6: caproate, C12: laurate, C16: palmitate). EstHE1 exhibited activity against C2 (5.6 U/mg), C4 (5.1 U/mg), and C6 (2.8 U/mg) substrates. The optimal temperature for EstHE1 esterase activity of the pNP acetate substrate was 40 degrees C, and EstHE1 retained 60% of its enzymatic activity in the 30-50 degrees C range. This esterase showed moderate thermostability, retaining 58% of its activity even after preincubation for 12 h at 40 degrees C. EstHE1 also maintained activity in high concentrations of NaCl, indicating that this esterase is salt-tolerant. Thus, EstHE1 has the thermal stability and salt tolerance necessary for use as an industrial enzyme.

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Year:  2009        PMID: 19789923     DOI: 10.1007/s10126-009-9226-x

Source DB:  PubMed          Journal:  Mar Biotechnol (NY)        ISSN: 1436-2228            Impact factor:   3.619


  22 in total

1.  Degenerate oligonucleotide gene shuffling (DOGS): a method for enhancing the frequency of recombination with family shuffling.

Authors:  M D Gibbs; K M Nevalainen; P L Bergquist
Journal:  Gene       Date:  2001-06-13       Impact factor: 3.688

2.  Isolation and phylogenetic analysis of bacteria with antimicrobial activities from the Mediterranean sponges Aplysina aerophoba and Aplysina cavernicola.

Authors:  U Hentschel; M Schmid; M Wagner; L Fieseler; C Gernert; J Hacker
Journal:  FEMS Microbiol Ecol       Date:  2001-05       Impact factor: 4.194

3.  Three Neocallimastix patriciarum esterases associated with the degradation of complex polysaccharides are members of a new family of hydrolases.

Authors:  Brian P Dalrymple; Daisy H Cybinski; Ingrid Layton; Christopher S McSweeney; Gang-Ping Xue; Yolande J Swadling; J Brian Lowry
Journal:  Microbiology (Reading)       Date:  1997-08       Impact factor: 2.777

4.  Crystal structure of the Escherichia coli thioesterase II, a homolog of the human Nef binding enzyme.

Authors:  J Li; U Derewenda; Z Dauter; S Smith; Z S Derewenda
Journal:  Nat Struct Biol       Date:  2000-07

5.  Structure of actinidin, after refinement at 1.7 A resolution.

Authors:  E N Baker
Journal:  J Mol Biol       Date:  1980-08-25       Impact factor: 5.469

6.  Effects of high concentration of salts on the esterase activity and structure of a kiwifruit peptidase, actinidain.

Authors:  Koichi Morimoto; Erino Furuta; Hiroshi Hashimoto; Kuniyo Inouye
Journal:  J Biochem       Date:  2006-06       Impact factor: 3.387

7.  Phylogenetic diversity of bacteria associated with the marine sponge Rhopaloeides odorabile.

Authors:  N S Webster; K J Wilson; L L Blackall; R T Hill
Journal:  Appl Environ Microbiol       Date:  2001-01       Impact factor: 4.792

8.  Backbone dynamics of Escherichia coli thioesterase/protease I: evidence of a flexible active-site environment for a serine protease.

Authors:  Y T Huang; Y C Liaw; V Y Gorbatyuk; T H Huang
Journal:  J Mol Biol       Date:  2001-04-06       Impact factor: 5.469

9.  Escherichia coli thioesterase I, molecular cloning and sequencing of the structural gene and identification as a periplasmic enzyme.

Authors:  H Cho; J E Cronan
Journal:  J Biol Chem       Date:  1993-05-05       Impact factor: 5.157

10.  Genetic diversity in Sargasso Sea bacterioplankton.

Authors:  S J Giovannoni; T B Britschgi; C L Moyer; K G Field
Journal:  Nature       Date:  1990-05-03       Impact factor: 49.962

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  13 in total

1.  Novel antibacterial proteins from the microbial communities associated with the sponge Cymbastela concentrica and the green alga Ulva australis.

Authors:  Pui Yi Yung; Catherine Burke; Matt Lewis; Staffan Kjelleberg; Torsten Thomas
Journal:  Appl Environ Microbiol       Date:  2010-12-23       Impact factor: 4.792

2.  Identification and characterization of a halotolerant, cold-active marine endo-β-1,4-glucanase by using functional metagenomics of seaweed-associated microbiota.

Authors:  Marjolaine Martin; Sophie Biver; Sébastien Steels; Tristan Barbeyron; Murielle Jam; Daniel Portetelle; Gurvan Michel; Micheline Vandenbol
Journal:  Appl Environ Microbiol       Date:  2014-06-06       Impact factor: 4.792

3.  A new alkaline lipase obtained from the metagenome of marine sponge Ircinia sp.

Authors:  Jing Su; Fengli Zhang; Wei Sun; Valliappan Karuppiah; Guangya Zhang; Zhiyong Li; Qun Jiang
Journal:  World J Microbiol Biotechnol       Date:  2015-04-29       Impact factor: 3.312

4.  Discovery of a Novel Gene Conferring Tellurite Tolerance Through Tellurite Reduction to Escherichia coli Transformant in Marine Sediment Metagenomic Library.

Authors:  Madison Pascual Munar; Hirokazu Takahashi; Yoshiko Okamura
Journal:  Mar Biotechnol (NY)       Date:  2019-10-21       Impact factor: 3.619

5.  Identification and characterization of carboxyl esterases of gill chamber-associated microbiota in the deep-sea shrimp Rimicaris exoculata by using functional metagenomics.

Authors:  María Alcaide; Anatoli Tchigvintsev; Mónica Martínez-Martínez; Ana Popovic; Oleg N Reva; Álvaro Lafraya; Rafael Bargiela; Taras Y Nechitaylo; Ruth Matesanz; Marie-Anne Cambon-Bonavita; Mohamed Jebbar; Michail M Yakimov; Alexei Savchenko; Olga V Golyshina; Alexander F Yakunin; Peter N Golyshin; Manuel Ferrer
Journal:  Appl Environ Microbiol       Date:  2015-01-16       Impact factor: 4.792

Review 6.  New extremophilic lipases and esterases from metagenomics.

Authors:  Olalla López-López; Maria E Cerdán; Maria I González Siso
Journal:  Curr Protein Pept Sci       Date:  2014       Impact factor: 3.272

7.  Isolation identification and biochemical characterization of a novel halo-tolerant lipase from the metagenome of the marine sponge Haliclona simulans.

Authors:  Joseph Selvin; Jonathan Kennedy; David P H Lejon; G Seghal Kiran; Alan D W Dobson
Journal:  Microb Cell Fact       Date:  2012-06-01       Impact factor: 5.328

Review 8.  Estimating the success of enzyme bioprospecting through metagenomics: current status and future trends.

Authors:  Manuel Ferrer; Mónica Martínez-Martínez; Rafael Bargiela; Wolfgang R Streit; Olga V Golyshina; Peter N Golyshin
Journal:  Microb Biotechnol       Date:  2015-08-14       Impact factor: 5.813

9.  In situ detection of antibiotic amphotericin B produced in Streptomyces nodosus using Raman microspectroscopy.

Authors:  Rimi Miyaoka; Masahito Hosokawa; Masahiro Ando; Tetsushi Mori; Hiro-O Hamaguchi; Haruko Takeyama
Journal:  Mar Drugs       Date:  2014-05-13       Impact factor: 5.118

Review 10.  Integrated (Meta) Genomic and Synthetic Biology Approaches to Develop New Biocatalysts.

Authors:  María L Parages; José A Gutiérrez-Barranquero; F Jerry Reen; Alan D W Dobson; Fergal O'Gara
Journal:  Mar Drugs       Date:  2016-03-21       Impact factor: 5.118

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