Literature DB >> 19789556

Rethinking how DNA methylation patterns are maintained.

Peter A Jones1, Gangning Liang.   

Abstract

DNA methylation patterns are set up early in mammalian development and are then copied during the division of somatic cells. A long-established model for the maintenance of these patterns explains some, but not all, of the data that are now available. We propose a new model that suggests that the maintenance of DNA methylation relies not only on the recognition of hemimethylated DNA by DNA methyltransferase 1 (DNMT1) but also on the localization of the DNMT3A and DNMT3B enzymes to specific chromatin regions that contain methylated DNA.

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Year:  2009        PMID: 19789556      PMCID: PMC2848124          DOI: 10.1038/nrg2651

Source DB:  PubMed          Journal:  Nat Rev Genet        ISSN: 1471-0056            Impact factor:   53.242


  71 in total

1.  The DNA methyltransferases associate with HP1 and the SUV39H1 histone methyltransferase.

Authors:  François Fuks; Paul J Hurd; Rachel Deplus; Tony Kouzarides
Journal:  Nucleic Acids Res       Date:  2003-05-01       Impact factor: 16.971

2.  Hairpin-bisulfite PCR: assessing epigenetic methylation patterns on complementary strands of individual DNA molecules.

Authors:  Charles D Laird; Nicole D Pleasant; Aaron D Clark; Jessica L Sneeden; K M Anwarul Hassan; Nathan C Manley; Jay C Vary; Todd Morgan; R Scott Hansen; Reinhard Stöger
Journal:  Proc Natl Acad Sci U S A       Date:  2003-12-12       Impact factor: 11.205

Review 3.  CpG islands--'a rough guide'.

Authors:  Robert S Illingworth; Adrian P Bird
Journal:  FEBS Lett       Date:  2009-04-18       Impact factor: 4.124

Review 4.  Linking DNA methylation and histone modification: patterns and paradigms.

Authors:  Howard Cedar; Yehudit Bergman
Journal:  Nat Rev Genet       Date:  2009-05       Impact factor: 53.242

5.  The DNMT3B DNA methyltransferase gene is mutated in the ICF immunodeficiency syndrome.

Authors:  R S Hansen; C Wijmenga; P Luo; A M Stanek; T K Canfield; C M Weemaes; S M Gartler
Journal:  Proc Natl Acad Sci U S A       Date:  1999-12-07       Impact factor: 11.205

6.  DNA methyltransferases Dnmt3a and Dnmt3b are essential for de novo methylation and mammalian development.

Authors:  M Okano; D W Bell; D A Haber; E Li
Journal:  Cell       Date:  1999-10-29       Impact factor: 41.582

7.  Recombinant human DNA (cytosine-5) methyltransferase. I. Expression, purification, and comparison of de novo and maintenance methylation.

Authors:  S Pradhan; A Bacolla; R D Wells; R J Roberts
Journal:  J Biol Chem       Date:  1999-11-12       Impact factor: 5.157

8.  Establishment and maintenance of genomic methylation patterns in mouse embryonic stem cells by Dnmt3a and Dnmt3b.

Authors:  Taiping Chen; Yoshihide Ueda; Jonathan E Dodge; Zhenjuan Wang; En Li
Journal:  Mol Cell Biol       Date:  2003-08       Impact factor: 4.272

9.  Conversion of 5-methylcytosine to 5-hydroxymethylcytosine in mammalian DNA by MLL partner TET1.

Authors:  Mamta Tahiliani; Kian Peng Koh; Yinghua Shen; William A Pastor; Hozefa Bandukwala; Yevgeny Brudno; Suneet Agarwal; Lakshminarayan M Iyer; David R Liu; L Aravind; Anjana Rao
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

10.  The nuclear DNA base 5-hydroxymethylcytosine is present in Purkinje neurons and the brain.

Authors:  Skirmantas Kriaucionis; Nathaniel Heintz
Journal:  Science       Date:  2009-04-16       Impact factor: 47.728

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  282 in total

Review 1.  Epigenetic regulation in alcoholic liver disease.

Authors:  Pranoti Mandrekar
Journal:  World J Gastroenterol       Date:  2011-05-28       Impact factor: 5.742

2.  Global DNA demethylation during mouse erythropoiesis in vivo.

Authors:  Jeffrey R Shearstone; Ramona Pop; Christoph Bock; Patrick Boyle; Alexander Meissner; Merav Socolovsky
Journal:  Science       Date:  2011-11-11       Impact factor: 47.728

Review 3.  Chromatin replication and epigenome maintenance.

Authors:  Constance Alabert; Anja Groth
Journal:  Nat Rev Mol Cell Biol       Date:  2012-02-23       Impact factor: 94.444

Review 4.  A decade of exploring the cancer epigenome - biological and translational implications.

Authors:  Stephen B Baylin; Peter A Jones
Journal:  Nat Rev Cancer       Date:  2011-09-23       Impact factor: 60.716

5.  DNA methyl transferase 1: regulatory mechanisms and implications in health and disease.

Authors:  Sirano Dhe-Paganon; Farisa Syeda; Lawrence Park
Journal:  Int J Biochem Mol Biol       Date:  2011-01-30

Review 6.  Functions of DNA methylation: islands, start sites, gene bodies and beyond.

Authors:  Peter A Jones
Journal:  Nat Rev Genet       Date:  2012-05-29       Impact factor: 53.242

Review 7.  Making memories that last a lifetime: heritable functions of self-renewing memory CD8 T cells.

Authors:  Ben Youngblood; Carl W Davis; Rafi Ahmed
Journal:  Int Immunol       Date:  2010-08-23       Impact factor: 4.823

8.  The Dnmt3a PWWP domain reads histone 3 lysine 36 trimethylation and guides DNA methylation.

Authors:  Arunkumar Dhayalan; Arumugam Rajavelu; Philipp Rathert; Raluca Tamas; Renata Z Jurkowska; Sergey Ragozin; Albert Jeltsch
Journal:  J Biol Chem       Date:  2010-06-11       Impact factor: 5.157

9.  Conservation and divergence of DNA methylation in eukaryotes: new insights from single base-resolution DNA methylomes.

Authors:  Zhixi Su; Leng Han; Zhongming Zhao
Journal:  Epigenetics       Date:  2011-02-01       Impact factor: 4.528

Review 10.  Epigenetic effects of green tea polyphenols in cancer.

Authors:  Susanne M Henning; Piwen Wang; Catherine L Carpenter; David Heber
Journal:  Epigenomics       Date:  2013-12       Impact factor: 4.778

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