Literature DB >> 19788322

Conditional RNA interference mediated by allosteric ribozyme.

Deepak Kumar1, Chung-Il An, Yohei Yokobayashi.   

Abstract

Conditional RNA interference (RNAi) enables spatial and/or temporal control over gene silencing. The currently available methods require coexpression of engineered proteins and/or modified promoters which may limit their applications. We designed a novel RNA architecture that combines a drug-inducible allosteric ribozyme with a microRNA precursor analogue that allows chemical induction of RNAi in mammalian cells. The compact and highly modular RNA design should facilitate the construction of conditional RNAi systems that can sense and respond to a variety of molecules recognized by RNA aptamers to regulate virtually any desired genes sensitive to RNAi.

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Year:  2009        PMID: 19788322     DOI: 10.1021/ja905596t

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  28 in total

1.  Kinetic analysis of aptazyme-regulated gene expression in a cell-free translation system: modeling of ligand-dependent and -independent expression.

Authors:  Shungo Kobori; Norikazu Ichihashi; Yasuaki Kazuta; Tomoaki Matsuura; Tetsuya Yomo
Journal:  RNA       Date:  2012-06-25       Impact factor: 4.942

Review 2.  Synthetic RNA switches as a tool for temporal and spatial control over gene expression.

Authors:  Andrew L Chang; Joshua J Wolf; Christina D Smolke
Journal:  Curr Opin Biotechnol       Date:  2012-02-03       Impact factor: 9.740

3.  A general design strategy for protein-responsive riboswitches in mammalian cells.

Authors:  Simon Ausländer; Pascal Stücheli; Charlotte Rehm; David Ausländer; Jörg S Hartig; Martin Fussenegger
Journal:  Nat Methods       Date:  2014-10-05       Impact factor: 28.547

Review 4.  Aptamers for allosteric regulation.

Authors:  Jan L Vinkenborg; Nora Karnowski; Michael Famulok
Journal:  Nat Chem Biol       Date:  2011-07-18       Impact factor: 15.040

Review 5.  Mammalian synthetic biology: emerging medical applications.

Authors:  Zoltán Kis; Hugo Sant'Ana Pereira; Takayuki Homma; Ryan M Pedrigi; Rob Krams
Journal:  J R Soc Interface       Date:  2015-05-06       Impact factor: 4.118

Review 6.  Molecular Engineering of Functional Nucleic Acid Nanomaterials toward In Vivo Applications.

Authors:  JingJing Zhang; Tian Lan; Yi Lu
Journal:  Adv Healthc Mater       Date:  2019-02-06       Impact factor: 9.933

Review 7.  Engineering Gene Circuits for Mammalian Cell-Based Applications.

Authors:  Simon Ausländer; Martin Fussenegger
Journal:  Cold Spring Harb Perspect Biol       Date:  2016-07-01       Impact factor: 10.005

8.  Logic integration of mRNA signals by an RNAi-based molecular computer.

Authors:  Zhen Xie; Siyuan John Liu; Leonidas Bleris; Yaakov Benenson
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

9.  Thermozymes: Synthetic RNA thermometers based on ribozyme activity.

Authors:  Athanasios Saragliadis; Stefanie S Krajewski; Charlotte Rehm; Franz Narberhaus; Jörg S Hartig
Journal:  RNA Biol       Date:  2013-04-01       Impact factor: 4.652

10.  Small synthetic molecule-stabilized RNA pseudoknot as an activator for -1 ribosomal frameshifting.

Authors:  Saki Matsumoto; Neva Caliskan; Marina V Rodnina; Asako Murata; Kazuhiko Nakatani
Journal:  Nucleic Acids Res       Date:  2018-09-19       Impact factor: 16.971

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