Literature DB >> 19779014

Alternative promoter and GATA5 transcripts in mouse.

Bohao Chen1, Elena Yates, Yong Huang, Paul Kogut, Lan Ma, Jerrold R Turner, Yun Tao, Blanca Camoretti-Mercado, Deborah Lang, Eric C Svensson, Joe G N Garcia, Peter J Gruber, Edward E Morrisey, Julian Solway.   

Abstract

GATA5 is a member of the GATA zinc finger transcription factor family involved in tissue-specific transcriptional regulation during cell differentiation and embryogenesis. Previous reports indicate that null mutation of the zebrafish GATA5 gene results in embryonic lethality, whereas deletion of exon 1 from the mouse GATA5 gene causes only derangement of female urogenital development. Here, we have identified an alternate promoter within intron 1 of the mouse GATA5 gene that transcribes a 2.5-kb mRNA that lacks exon 1 entirely but includes 82 bp from intron 1 and all of exons 2-6. The alternative promoter was active during transient transfection in cultured airway myocytes and bronchial epithelial cells, and it drove reporter gene expression in gastric epithelial cells in transgenic mice. The 2.5-kb alternative transcript encodes an NH(2)-terminally truncated "short GATA5" comprising aa 226-404 with a single zinc finger, which retains ability to transactivate the atrial natriuretic factor promoter (albeit less efficiently than full-length GATA5). Another new GATA5 transcript contains all of exons 1-5 and the 5' portion of exon 6 but lacks the terminal 1143 bp of the 3'-untranslated region from exon 6. These findings extend current understanding of the tissue distribution of GATA5 expression and suggests that GATA5 expression and function are more complex than previously appreciated.

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Year:  2009        PMID: 19779014      PMCID: PMC2850090          DOI: 10.1152/ajpgi.00165.2009

Source DB:  PubMed          Journal:  Am J Physiol Gastrointest Liver Physiol        ISSN: 0193-1857            Impact factor:   4.052


  32 in total

Review 1.  The zinc finger-containing transcription factors GATA-4, -5, and -6. Ubiquitously expressed regulators of tissue-specific gene expression.

Authors:  J D Molkentin
Journal:  J Biol Chem       Date:  2000-12-15       Impact factor: 5.157

2.  Functional analysis and in vivo footprinting implicate the erythroid transcription factor GATA-1 as a positive regulator of its own promoter.

Authors:  S F Tsai; E Strauss; S H Orkin
Journal:  Genes Dev       Date:  1991-06       Impact factor: 11.361

3.  GATA-4 activates transcription via two novel domains that are conserved within the GATA-4/5/6 subfamily.

Authors:  E E Morrisey; H S Ip; Z Tang; M S Parmacek
Journal:  J Biol Chem       Date:  1997-03-28       Impact factor: 5.157

4.  Distinct functions are implicated for the GATA-4, -5, and -6 transcription factors in the regulation of intestine epithelial cell differentiation.

Authors:  X Gao; T Sedgwick; Y B Shi; T Evans
Journal:  Mol Cell Biol       Date:  1998-05       Impact factor: 4.272

5.  Alternative promoters regulate transcription of the mouse GATA-2 gene.

Authors:  N Minegishi; J Ohta; N Suwabe; H Nakauchi; H Ishihara; N Hayashi; M Yamamoto
Journal:  J Biol Chem       Date:  1998-02-06       Impact factor: 5.157

6.  Comparison of human and Xenopus GATA-2 promoters.

Authors:  D E Fleenor; S D Langdon; C M deCastro; R E Kaufman
Journal:  Gene       Date:  1996-11-14       Impact factor: 3.688

7.  Transcripts for functionally distinct isoforms of chicken GATA-5 are differentially expressed from alternative first exons.

Authors:  C MacNeill; B Ayres; A C Laverriere; J B Burch
Journal:  J Biol Chem       Date:  1997-03-28       Impact factor: 5.157

8.  High-level activation by a duodenum-specific enhancer requires functional GATA binding sites.

Authors:  Mary R Dusing; Elizabeth A Florence; Dan A Wiginton
Journal:  Am J Physiol Gastrointest Liver Physiol       Date:  2003-02-05       Impact factor: 4.052

Review 9.  The roles of GATA-4, -5 and -6 in vertebrate heart development.

Authors:  Tessa Peterkin; Abigail Gibson; Matthew Loose; Roger Patient
Journal:  Semin Cell Dev Biol       Date:  2004-12-15       Impact factor: 7.727

10.  Murine lung responses to ambient particulate matter: genomic analysis and influence on airway hyperresponsiveness.

Authors:  Ting Wang; Liliana Moreno-Vinasco; Yong Huang; Gabriel D Lang; Jered D Linares; Sascha N Goonewardena; Alayna Grabavoy; Jonathan M Samet; Alison S Geyh; Patrick N Breysse; Yves A Lussier; Viswanathan Natarajan; Joe G N Garcia
Journal:  Environ Health Perspect       Date:  2008-06-20       Impact factor: 9.031

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  7 in total

1.  Loss of Gata5 in mice leads to bicuspid aortic valve.

Authors:  Brigitte Laforest; Gregor Andelfinger; Mona Nemer
Journal:  J Clin Invest       Date:  2011-07       Impact factor: 14.808

2.  Upstream stimulatory factor 1 activates GATA5 expression through an E-box motif.

Authors:  Bohao Chen; Rona Hsu; Zhenping Li; Paul C Kogut; Qingxia Du; Kelly Rouser; Blanca Camoretti-Mercado; Julian Solway
Journal:  Biochem J       Date:  2012-08-15       Impact factor: 3.857

3.  GATA6 promotes colon cancer cell invasion by regulating urokinase plasminogen activator gene expression.

Authors:  Narasimhaswamy S Belaguli; Muhammad Aftab; Mohammed Rigi; Mao Zhang; Daniel Albo; David H Berger
Journal:  Neoplasia       Date:  2010-11       Impact factor: 5.715

4.  Rare GATA5 sequence variants identified in individuals with bicuspid aortic valve.

Authors:  Elizabeth M Bonachea; Sheng-Wei Chang; Gloria Zender; Stephanie LaHaye; Sara Fitzgerald-Butt; Kim L McBride; Vidu Garg
Journal:  Pediatr Res       Date:  2014-05-05       Impact factor: 3.756

5.  Novel and functional DNA sequence variants within the GATA5 gene promoter in ventricular septal defects.

Authors:  Ji-Ping Shan; Xiao-Li Wang; Yuan-Gang Qiao; Hong-Xin Wan Yan; Wen-Hui Huang; Shu-Chao Pang; Bo Yan
Journal:  World J Pediatr       Date:  2014-12-17       Impact factor: 2.764

6.  A Combined Human in Silico and CRISPR/Cas9-Mediated in Vivo Zebrafish Based Approach to Provide Phenotypic Data for Supporting Early Target Validation.

Authors:  Matthew J Winter; Yosuke Ono; Jonathan S Ball; Anna Walentinsson; Erik Michaelsson; Anna Tochwin; Steffen Scholpp; Charles R Tyler; Steve Rees; Malcolm J Hetheridge; Mohammad Bohlooly-Y
Journal:  Front Pharmacol       Date:  2022-04-25       Impact factor: 5.988

7.  Gata5 deficiency causes airway constrictor hyperresponsiveness in mice.

Authors:  Bohao Chen; Tamson V Moore; Zhenping Li; Anne I Sperling; Chunling Zhang; Jorge Andrade; Alex Rodriguez; Neil Bahroos; Yong Huang; Edward E Morrisey; Peter J Gruber; Julian Solway
Journal:  Am J Respir Cell Mol Biol       Date:  2014-04       Impact factor: 6.914

  7 in total

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