Literature DB >> 19768801

NMR solution structures of actin depolymerizing factor homology domains.

Alexander K Goroncy1, Seizo Koshiba, Naoya Tochio, Tadashi Tomizawa, Manami Sato, Makato Inoue, Satoru Watanabe, Yoshihide Hayashizaki, Akiko Tanaka, Takanori Kigawa, Shigeyuki Yokoyama.   

Abstract

Actin is one of the most conserved proteins in nature. Its assembly and disassembly are regulated by many proteins, including the family of actin-depolymerizing factor homology (ADF-H) domains. ADF-H domains can be divided into five classes: ADF/cofilin, glia maturation factor (GMF), coactosin, twinfilin, and Abp1/drebrin. The best-characterized class is ADF/cofilin. The other four classes have drawn much less attention and very few structures have been reported. This study presents the solution NMR structure of the ADF-H domain of human HIP-55-drebrin-like protein, the first published structure of a drebrin-like domain (mammalian), and the first published structure of GMF beta (mouse). We also determined the structures of mouse GMF gamma, the mouse coactosin-like domain and the C-terminal ADF-H domain of mouse twinfilin 1. Although the overall fold of the five domains is similar, some significant differences provide valuable insights into filamentous actin (F-actin) and globular actin (G-actin) binding, including the identification of binding residues on the long central helix. This long helix is stabilized by three or four residues. Notably, the F-actin binding sites of mouse GMF beta and GMF gamma contain two additional beta-strands not seen in other ADF-H structures. The G-actin binding site of the ADF-H domain of human HIP-55-drebrin-like protein is absent and distorted in mouse GMF beta and GMF gamma.

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Year:  2009        PMID: 19768801      PMCID: PMC2788292          DOI: 10.1002/pro.248

Source DB:  PubMed          Journal:  Protein Sci        ISSN: 0961-8368            Impact factor:   6.725


  28 in total

1.  Structural conservation between the actin monomer-binding sites of twinfilin and actin-depolymerizing factor (ADF)/cofilin.

Authors:  Ville O Paavilainen; Michael C Merckel; Sandra Falck; Pauli J Ojala; Ehmke Pohl; Matthias Wilmanns; Pekka Lappalainen
Journal:  J Biol Chem       Date:  2002-08-30       Impact factor: 5.157

Review 2.  Regulation of growth cone actin dynamics by ADF/cofilin.

Authors:  Ravine A Gungabissoon; James R Bamburg
Journal:  J Histochem Cytochem       Date:  2003-04       Impact factor: 2.479

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Journal:  J Mol Graph       Date:  1996-02

4.  Purification and characterization of glia maturation factor beta: a growth regulator for neurons and glia.

Authors:  R Lim; J F Miller; A Zaheer
Journal:  Proc Natl Acad Sci U S A       Date:  1989-05       Impact factor: 11.205

5.  Protein backbone angle restraints from searching a database for chemical shift and sequence homology.

Authors:  G Cornilescu; F Delaglio; A Bax
Journal:  J Biomol NMR       Date:  1999-03       Impact factor: 2.835

6.  NMRPipe: a multidimensional spectral processing system based on UNIX pipes.

Authors:  F Delaglio; S Grzesiek; G W Vuister; G Zhu; J Pfeifer; A Bax
Journal:  J Biomol NMR       Date:  1995-11       Impact factor: 2.835

7.  Functional annotation of a full-length mouse cDNA collection.

Authors:  J Kawai; A Shinagawa; K Shibata; M Yoshino; M Itoh; Y Ishii; T Arakawa; A Hara; Y Fukunishi; H Konno; J Adachi; S Fukuda; K Aizawa; M Izawa; K Nishi; H Kiyosawa; S Kondo; I Yamanaka; T Saito; Y Okazaki; T Gojobori; H Bono; T Kasukawa; R Saito; K Kadota; H Matsuda; M Ashburner; S Batalov; T Casavant; W Fleischmann; T Gaasterland; C Gissi; B King; H Kochiwa; P Kuehl; S Lewis; Y Matsuo; I Nikaido; G Pesole; J Quackenbush; L M Schriml; F Staubli; R Suzuki; M Tomita; L Wagner; T Washio; K Sakai; T Okido; M Furuno; H Aono; R Baldarelli; G Barsh; J Blake; D Boffelli; N Bojunga; P Carninci; M F de Bonaldo; M J Brownstein; C Bult; C Fletcher; M Fujita; M Gariboldi; S Gustincich; D Hill; M Hofmann; D A Hume; M Kamiya; N H Lee; P Lyons; L Marchionni; J Mashima; J Mazzarelli; P Mombaerts; P Nordone; B Ring; M Ringwald; I Rodriguez; N Sakamoto; H Sasaki; K Sato; C Schönbach; T Seya; Y Shibata; K F Storch; H Suzuki; K Toyo-oka; K H Wang; C Weitz; C Whittaker; L Wilming; A Wynshaw-Boris; K Yoshida; Y Hasegawa; H Kawaji; S Kohtsuki; Y Hayashizaki
Journal:  Nature       Date:  2001-02-08       Impact factor: 49.962

8.  Improving cell-free protein synthesis for stable-isotope labeling.

Authors:  Takayoshi Matsuda; Seizo Koshiba; Naoya Tochio; Eiko Seki; Noriyuki Iwasaki; Takashi Yabuki; Makoto Inoue; Shigeyuki Yokoyama; Takanori Kigawa
Journal:  J Biomol NMR       Date:  2007-01-20       Impact factor: 2.835

9.  The SH3 domain-containing adaptor HIP-55 mediates c-Jun N-terminal kinase activation in T cell receptor signaling.

Authors:  Jin Han; Rajashree Kori; Jr-Wen Shui; Yi-Rong Chen; Zhengbin Yao; Tse-Hua Tan
Journal:  J Biol Chem       Date:  2003-10-13       Impact factor: 5.157

10.  Solution structure of coactosin reveals structural homology to ADF/cofilin family proteins.

Authors:  Maarit Hellman; Ville O Paavilainen; Perttu Naumanen; Pekka Lappalainen; Arto Annila; Perttu Permi
Journal:  FEBS Lett       Date:  2004-10-08       Impact factor: 4.124

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  23 in total

1.  NMR and X-ray structures of the putative sterol carrier protein 2 from Thermus thermophilus HB8 show conformational changes.

Authors:  Alexander K Goroncy; Kazutaka Murayama; Mikako Shirouzu; Seiki Kuramitsu; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2010-10-05

2.  Drebrin-like (Dbnl) Controls Neuronal Migration via Regulating N-Cadherin Expression in the Developing Cerebral Cortex.

Authors:  Seika Inoue; Kanehiro Hayashi; Kyota Fujita; Kazuhiko Tagawa; Hitoshi Okazawa; Ken-Ichiro Kubo; Kazunori Nakajima
Journal:  J Neurosci       Date:  2018-11-30       Impact factor: 6.167

3.  The NMR solution structures of the five constituent cold-shock domains (CSD) of the human UNR (upstream of N-ras) protein.

Authors:  Alexander K Goroncy; Seizo Koshiba; Naoya Tochio; Tadashi Tomizawa; Makoto Inoue; Makato Inoue; Satoru Watanabe; Takushi Harada; Akiko Tanaka; Osamu Ohara; Takanori Kigawa; Shigeyuki Yokoyama
Journal:  J Struct Funct Genomics       Date:  2010-03-06

4.  Species-Specific Functions of Twinfilin in Actin Filament Depolymerization.

Authors:  Denise M Hilton; Rey M Aguilar; Adam B Johnston; Bruce L Goode
Journal:  J Mol Biol       Date:  2018-06-18       Impact factor: 5.469

5.  An assignment of intrinsically disordered regions of proteins based on NMR structures.

Authors:  Motonori Ota; Ryotaro Koike; Takayuki Amemiya; Takeshi Tenno; Pedro R Romero; Hidekazu Hiroaki; A Keith Dunker; Satoshi Fukuchi
Journal:  J Struct Biol       Date:  2012-11-07       Impact factor: 2.867

6.  Molecular mechanism for inhibition of twinfilin by phosphoinositides.

Authors:  Markku Hakala; Maria Kalimeri; Giray Enkavi; Ilpo Vattulainen; Pekka Lappalainen
Journal:  J Biol Chem       Date:  2018-02-07       Impact factor: 5.157

7.  GMF is a cofilin homolog that binds Arp2/3 complex to stimulate filament debranching and inhibit actin nucleation.

Authors:  Meghal Gandhi; Benjamin A Smith; Miia Bovellan; Ville Paavilainen; Karen Daugherty-Clarke; Jeff Gelles; Pekka Lappalainen; Bruce L Goode
Journal:  Curr Biol       Date:  2010-04-01       Impact factor: 10.834

8.  Glia maturation factor-γ mediates neutrophil chemotaxis.

Authors:  Wulin Aerbajinai; Lunhua Liu; Kyung Chin; Jianqiong Zhu; Carole A Parent; Griffin P Rodgers
Journal:  J Leukoc Biol       Date:  2011-06-07       Impact factor: 4.962

9.  Further studies about Coactosin-like protein-1 affecting the migration of mouse neocortical neurons.

Authors:  Mengmeng Liu; Guohong Li; Mengli Wang; Xinran Cheng; Yinxue Huang; Mingrui Xu; Kaikai Li; Jiong Chen; Xiaoyan Zhu; Shanting Zhao
Journal:  J Mol Histol       Date:  2018-08-20       Impact factor: 2.611

10.  Glia maturation factor (GMF) interacts with Arp2/3 complex in a nucleotide state-dependent manner.

Authors:  Malgorzata Boczkowska; Grzegorz Rebowski; Roberto Dominguez
Journal:  J Biol Chem       Date:  2013-07-29       Impact factor: 5.157

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