Literature DB >> 19768623

High-throughput screening of plant cell-wall composition using pyrolysis molecular beam mass spectroscopy.

Robert Sykes1, Matthew Yung, Evandro Novaes, Matias Kirst, Gary Peter, Mark Davis.   

Abstract

We describe a high-throughput method for estimating cell-wall chemistry traits using analytical pyrolysis. The instrument used to perform the high-throughput cell-wall chemistry analysis consists of a commercially available pyrolysis unit and autosampler coupled to a custom-built molecular beam mass spectrometer. The system is capable of analyzing approximately 42 biomass samples per hour. Lignin content and syringyl to guaiacol (S/G) ratios can be estimated directly from the spectra and differences in cell wall chemistry in large groups of samples can easily be identified using multivariate statistical data analysis methods. The utility of the system is demonstrated on a set of 800 greenhouse-grown poplar trees grown under two contrasting nitrogen treatments. High-throughput analytical pyrolysis was able to determine that the lignin content varied between 13 and 28% and the S/G ratio ranged from 0.5 to 1.5. There was more cell-wall chemistry variation in the plants grown under high nitrogen conditions than trees grown under nitrogen-deficiency conditions. Analytical pyrolysis allows the user to rapidly screen large numbers of samples at low cost, using very little sample material while producing reliable and reproducible results.

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Year:  2009        PMID: 19768623     DOI: 10.1007/978-1-60761-214-8_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  36 in total

1.  Lignin content in natural Populus variants affects sugar release.

Authors:  Michael H Studer; Jaclyn D DeMartini; Mark F Davis; Robert W Sykes; Brian Davison; Martin Keller; Gerald A Tuskan; Charles E Wyman
Journal:  Proc Natl Acad Sci U S A       Date:  2011-03-28       Impact factor: 11.205

2.  High-throughput Screening of Recalcitrance Variations in Lignocellulosic Biomass: Total Lignin, Lignin Monomers, and Enzymatic Sugar Release.

Authors:  Stephen R Decker; Robert W Sykes; Geoffrey B Turner; Jason S Lupoi; Crissa Doepkke; Melvin P Tucker; Logan A Schuster; Kimberly Mazza; Michael E Himmel; Mark F Davis; Erica Gjersing
Journal:  J Vis Exp       Date:  2015-09-15       Impact factor: 1.355

3.  Overexpression of a BAHD acyltransferase, OsAt10, alters rice cell wall hydroxycinnamic acid content and saccharification.

Authors:  Laura E Bartley; Matthew L Peck; Sung-Ryul Kim; Berit Ebert; Chithra Manisseri; Dawn M Chiniquy; Robert Sykes; Lingfang Gao; Carsten Rautengarten; Miguel E Vega-Sánchez; Peter I Benke; Patrick E Canlas; Peijian Cao; Susan Brewer; Fan Lin; Whitney L Smith; Xiaohan Zhang; Jay D Keasling; Rolf E Jentoff; Steven B Foster; Jizhong Zhou; Angela Ziebell; Gynheung An; Henrik V Scheller; Pamela C Ronald
Journal:  Plant Physiol       Date:  2013-02-07       Impact factor: 8.340

4.  Structural characterization of alkaline hydrogen peroxide pretreated grasses exhibiting diverse lignin phenotypes.

Authors:  Muyang Li; Cliff Foster; Shantanu Kelkar; Yunqiao Pu; Daniel Holmes; Arthur Ragauskas; Christopher M Saffron; David B Hodge
Journal:  Biotechnol Biofuels       Date:  2012-06-06       Impact factor: 6.040

5.  Accuracy of genomic selection methods in a standard data set of loblolly pine (Pinus taeda L.).

Authors:  M F R Resende; P Muñoz; M D V Resende; D J Garrick; R L Fernando; J M Davis; E J Jokela; T A Martin; G F Peter; M Kirst
Journal:  Genetics       Date:  2012-01-23       Impact factor: 4.562

6.  Ethanol and High-Value Terpene Co-Production from Lignocellulosic Biomass of Cymbopogon flexuosus and Cymbopogon martinii.

Authors:  Blake L Joyce; Valtcho D Zheljazkov; Robert Sykes; Charles L Cantrell; Choo Hamilton; David G J Mann; Miguel Rodriguez; Jonathan R Mielenz; Tess Astatkie; C Neal Stewart
Journal:  PLoS One       Date:  2015-10-05       Impact factor: 3.240

7.  Down-regulation of p-coumaroyl quinate/shikimate 3'-hydroxylase (C3'H) and cinnamate 4-hydroxylase (C4H) genes in the lignin biosynthetic pathway of Eucalyptus urophylla × E. grandis leads to improved sugar release.

Authors:  Robert W Sykes; Erica L Gjersing; Kirk Foutz; William H Rottmann; Sean A Kuhn; Cliff E Foster; Angela Ziebell; Geoffrey B Turner; Stephen R Decker; Maud A W Hinchee; Mark F Davis
Journal:  Biotechnol Biofuels       Date:  2015-08-27       Impact factor: 6.040

8.  High-throughput prediction of eucalypt lignin syringyl/guaiacyl content using multivariate analysis: a comparison between mid-infrared, near-infrared, and Raman spectroscopies for model development.

Authors:  Jason S Lupoi; Seema Singh; Mark Davis; David J Lee; Merv Shepherd; Blake A Simmons; Robert J Henry
Journal:  Biotechnol Biofuels       Date:  2014-06-17       Impact factor: 6.040

9.  Identification and Molecular Characterization of the Switchgrass AP2/ERF Transcription Factor Superfamily, and Overexpression of PvERF001 for Improvement of Biomass Characteristics for Biofuel.

Authors:  Wegi A Wuddineh; Mitra Mazarei; Geoffrey B Turner; Robert W Sykes; Stephen R Decker; Mark F Davis; C Neal Stewart
Journal:  Front Bioeng Biotechnol       Date:  2015-07-20

10.  Stress-responsive hydroxycinnamate glycosyltransferase modulates phenylpropanoid metabolism in Populus.

Authors:  Benjamin A Babst; Han-Yi Chen; Hong-Qiang Wang; Raja S Payyavula; Tina P Thomas; Scott A Harding; Chung-Jui Tsai
Journal:  J Exp Bot       Date:  2014-05-06       Impact factor: 6.992

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