| Literature DB >> 19768503 |
ShiNan Dong1, ZhongYuan Shen, Li Xu, Feng Zhu.
Abstract
The complete small subunit rRNA (SSU rRNA) gene sequences of five microsporidia including Nosema heliothidis, and four novel microsporidia isolated from Pieris rapae, Phyllobrotica armta, Hemerophila atrilineata, and Bombyx mori, respectively, were obtained by PCR amplification, cloning, and sequencing. Two phylogenetic trees based on SSU rRNA sequences had been constructed by using Neighbor-Joining of Phylip software and UPGMA of MEGA4.0 software. The taxonomic status of four novel microsporidia was determined by analysis of phylogenetic relationship, length, G+C content, identity, and divergence of the SSU rRNA sequences. The results showed that the microsporidia isolated from Pieris rapae, Phyllobrotica armta, and Hemerophila atrilineata have close phylogenetic relationship with the Nosema, while another microsporidium isolated from Bombyx mori is closely related to the Endoreticulatus. So, we temporarily classify three novel species of microsporidia to genus Nosema, as Nosema sp. PR, Nosema sp. PA, Nosema sp. HA. Another is temporarily classified into genus Endoreticulatus, as Endoreticulatus sp. Zhenjiang. The result indicated as well that it is feasible and valuable to elucidate phylogenetic relationships and taxonomic status of microsporidian species by analyzing information from SSU rRNA sequences of microsporidia.Entities:
Mesh:
Substances:
Year: 2009 PMID: 19768503 PMCID: PMC2796967 DOI: 10.1007/s00284-009-9495-7
Source DB: PubMed Journal: Curr Microbiol ISSN: 0343-8651 Impact factor: 2.188
The host insects, geographic regions and accession of five microsporidian species
| No. | Microsporidia | Host insects | Geographic regions | Accession |
|---|---|---|---|---|
| 1 |
|
| Zhenjiang, Jiangsu, China | EU864531 |
| 2 |
|
| Mianyang, Sichuan, China | EU864528 |
| 3 |
|
| Baoding, Heibei, China | EU864529 |
| 4 |
|
| Zhenjiang, Jiangsu, China | EU864527 |
| 5 |
|
| Zhenjiang, Jiangsu, China | EU864530 |
The taxon, accession number, author, and published year of microsporidia and Beauveria bassiana which were aligned for homology
| No. | Taxon | Accession | No. | Taxon | Accession | No. | Taxon | Accession |
|---|---|---|---|---|---|---|---|---|
| 1 |
| U68473 | 33 |
| *AY090067 | 65 |
| AJ252956 |
| 2 |
| *AY090056 | 34 |
| AF387331 | 66 |
| *AJ252960 |
| 3 |
| *AY090060 | 35 |
| *AF483838 | 67 |
| *AF322654 |
| 4 |
| *AF025685 | 36 |
| L39110 | 68 |
| AF484694 |
| 5 |
| *AY090061 | 37 |
| *AY013359 | 69 |
| *AY135024 |
| 6 |
| *AY090044 | 38 |
| AJ252950 | 70 |
| *AF104086 |
| 7 |
| *AY090062 | 39 |
| *AF356222 | 71 |
| *AF364303 |
| 8 |
| *AY090051 | 40 |
| AF394527 | 72 |
| AF134205 |
| 9 |
| *AY090047 | 41 |
| *AF320310 | 73 |
| AJ002605 |
| 10 |
| *AY090052 | 42 |
| *AY033054 | 74 |
| *AF484695 |
| 11 |
| *AY090049 | 43 |
| *AF151529 | 75 |
| Y00266 |
| 12 |
| *AY090050 | 44 |
| *AF305706 | 76 |
| AF033315 |
| 13 |
| *AY090048 | 45 |
| *AF495379 | 77 |
| AJ252961 |
| 14 |
| L15741 | 46 |
| AF024658 | 78 |
| X74112 |
| 15 |
| AF024655 | 47 |
| U97150 | 79 |
| U11046 |
| 16 |
| *AF104087 | 48 |
| AY008373 | 80 |
| AF132544 |
| 17 |
| *AY090042 | 49 |
| *AF426104 | 81 |
| AY376351 |
| 18 |
| AM422905 | 50 |
| DQ486027 | 82 |
| *AJ295326 |
| 19 |
| *AF484692 | 51 |
| U26532 | 83 |
| *AJ295325 |
| 20 |
| AF027683 | 52 |
| *AJ011833 | 84 |
| *DQ019419 |
| 21 |
| AJ302320 | 53 |
| U27359 | 85 |
| AY960987 |
| 22 |
| Z19563 | 54 |
| AF033316 | 86 |
| AY383655 |
| 23 |
| *AF067144 | 55 |
| AJ012606 | 87 |
| AY960986 |
| 24 |
| *AY009115 | 56 |
| U11047 | 88 |
| AY747307 |
| 25 |
| L39109 | 57 |
| AF394529 | 89 |
| *EF119339 |
| 26 |
| *AF186003 | 58 |
| AJ302317 | 90 |
| AY502945 |
| 27 |
| AJ302318 | 59 |
| *AF356223 | 91 |
| AY502944 |
| 28 |
| AF044391 | 60 |
| AF027682 | 92 |
| *EU260046 |
| 29 |
| U15987 | 61 |
| *AY090065 | 93 |
| AY259631 |
| 30 |
| *AF439320 | 62 |
| AJ252953 | 94 |
| DQ073396 |
| 31 |
| *AY090041 | 63 |
| AJ252954 | 95 |
| *EU334679 |
| 32 |
| AF394526 | 64 |
| AJ252955 |
Note: The SSU rRNA gene noted with ‘*’ is partial sequence
Fig. 1Phylogenetic tree constructed by the Neighbor-Joining method for the SSU rRNA sequences of microsporidia. Beauveria bassiana is included as an out-group. Neighbor-Joining consensus tree used 1000 bootstrap replicates. The number represents the percentage of bootstrap values
Fig. 2Phylogenetic tree constructed by the UPGMA method for the SSU rRNA sequences of microsporidia. Beauveria bassiana is included as an out-group. The UPGMA tree used 1000 bootstrap replicates. The number represents the percentage of bootstrap values, and the evolutionary distance was shown below
The length and GC content of complete SSU rRNA sequences of 22 microsporidian species
| No. | Taxon | Lengths (bp) | GC content (%) | No. | Taxon | Lengths (bp) | GC content (%) |
|---|---|---|---|---|---|---|---|
| 1 |
| 1232 | 34.09 | 12 |
| 1233 | 34.39 |
| 2 |
| 1233 | 33.98 | 13 |
| 1242 | 38.73 |
| 3 |
| 1232 | 34.25 | 14 |
| 1247 | 38.09 |
| 4 |
| 1237 | 34.28 | 15 |
| 1259 | 36.46 |
| 5 |
| 1232 | 34.17 | 16 |
| 1251 | 36.85 |
| 6 |
| 1232 | 33.93 | 17 |
| 1393 | 35.75 |
| 7 |
| 1232 | 34.09 | 18 |
| 1245 | 36.79 |
| 8 |
| 1231 | 34.93 | 19 |
| 1252 | 51.04 |
| 9 |
| 1236 | 34.22 | 20 |
| 1254 | 51.04 |
| 10 |
| 1232 | 34.09 | 21 |
| 1254 | 51.12 |
| 11 |
| 1232 | 34.09 | 22 |
| 1254 | 50.96 |