Literature DB >> 19763930

Haplotype association mapping in mice.

Shirng-Wern Tsaih1, Ron Korstanje.   

Abstract

Haplotype Association Mapping (HAM) is a novel phenotype-driven approach to identify genetic loci and was originally developed for mice. This method, which is similar to Genome-Wide Association (GWA) studies in humans, looks for associations between the phenotype and the haplotypes of mouse inbred strains, treating inbred strains as individuals. Although this approach is still in development, we review the current literature, present the different methods and applications that are in use, and provide a glimpse of what is to come in the near future.

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Year:  2009        PMID: 19763930     DOI: 10.1007/978-1-60761-247-6_12

Source DB:  PubMed          Journal:  Methods Mol Biol        ISSN: 1064-3745


  12 in total

Review 1.  Fluoride's effects on the formation of teeth and bones, and the influence of genetics.

Authors:  E T Everett
Journal:  J Dent Res       Date:  2010-10-06       Impact factor: 6.116

Review 2.  Using Genetic and Species Diversity to Tackle Kidney Disease.

Authors:  Michael R Garrett; Ron Korstanje
Journal:  Trends Genet       Date:  2020-04-30       Impact factor: 11.639

3.  Identification of exercise capacity QTL using association mapping in inbred mice.

Authors:  Sean M Courtney; Michael P Massett
Journal:  Physiol Genomics       Date:  2012-08-21       Impact factor: 3.107

4.  Genetic analysis of mesangial matrix expansion in aging mice and identification of Far2 as a candidate gene.

Authors:  Gerda A Noordmans; Christina R Caputo; Yuan Huang; Susan M Sheehan; Marian Bulthuis; Peter Heeringa; Jan-Luuk Hillebrands; Harry van Goor; Ron Korstanje
Journal:  J Am Soc Nephrol       Date:  2013-09-05       Impact factor: 10.121

5.  Genetic analysis of mouse strains with variable serum sodium concentrations identifies the Nalcn sodium channel as a novel player in osmoregulation.

Authors:  Anne P Sinke; Christina Caputo; Shirng-Wern Tsaih; Rong Yuan; Dejian Ren; Peter M T Deen; Ron Korstanje
Journal:  Physiol Genomics       Date:  2010-12-21       Impact factor: 3.107

Review 6.  Combining genome-wide data from humans and animal models of dyslipidemia and atherosclerosis.

Authors:  Stela Z Berisha; Jonathan D Smith
Journal:  Curr Opin Lipidol       Date:  2011-04       Impact factor: 4.776

7.  In silico QTL mapping of basal liver iron levels in inbred mouse strains.

Authors:  Stela McLachlan; Seung-Min Lee; Teresa M Steele; Paula L Hawthorne; Matthew A Zapala; Eleazar Eskin; Nicholas J Schork; Gregory J Anderson; Chris D Vulpe
Journal:  Physiol Genomics       Date:  2010-11-09       Impact factor: 3.107

8.  Haplotype Association Mapping Identifies a Candidate Gene Region in Mice Infected With Staphylococcus aureus.

Authors:  Nicole V Johnson; Sun Hee Ahn; Hitesh Deshmukh; Mikhail K Levin; Charlotte L Nelson; William K Scott; Andrew Allen; Vance G Fowler; Lindsay G Cowell
Journal:  G3 (Bethesda)       Date:  2012-06-01       Impact factor: 3.154

9.  Identification of novel genes associated with renal tertiary lymphoid organ formation in aging mice.

Authors:  Yuan Huang; Christina R Caputo; Gerda A Noordmans; Saleh Yazdani; Luiz Henrique Monteiro; Jaap van den Born; Harry van Goor; Peter Heeringa; Ron Korstanje; Jan-Luuk Hillebrands
Journal:  PLoS One       Date:  2014-03-17       Impact factor: 3.240

10.  The role of mouse strain differences in the susceptibility to fibrosis: a systematic review.

Authors:  Louise Walkin; Sarah E Herrick; Angela Summers; Paul E Brenchley; Catherine M Hoff; Ron Korstanje; Peter J Margetts
Journal:  Fibrogenesis Tissue Repair       Date:  2013-09-25
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