Literature DB >> 19762342

Purification and some properties of wild-type and N-terminal-truncated ethanolamine ammonia-lyase of Escherichia coli.

Keita Akita1, Naoki Hieda, Nobuyuki Baba, Satoshi Kawaguchi, Hirohisa Sakamoto, Yuka Nakanishi, Mamoru Yamanishi, Koichi Mori, Tetsuo Toraya.   

Abstract

The methods of homologous high-level expression and simple large-scale purification for coenzyme B(12)-dependent ethanolamine ammonia-lyase of Escherichia coli were developed. The eutB and eutC genes in the eut operon encoded the large and small subunits of the enzyme, respectively. The enzyme existed as the heterododecamer alpha(6)beta(6). Upon active-site titration with adeninylpentylcobalamin, a strong competitive inhibitor for coenzyme B(12), the binding of 1 mol of the inhibitor per mol of the alphabeta unit caused complete inhibition of enzyme, in consistent with its subunit structure. EPR spectra indicated the formation of substrate-derived radicals during catalysis and the binding of cobalamin in the base-on mode, i.e. with 5,6-dimethylbenzimidazole coordinating to the cobalt atom. The purified wild-type enzyme underwent aggregation and inactivation at high concentrations. Limited proteolysis with trypsin indicated that the N-terminal region is not essential for catalysis. His-tagged truncated enzymes were similar to the wild-type enzyme in catalytic properties, but more resistant to p-chloromercuribenzoate than the wild-type enzyme. A truncated enzyme was highly soluble even in the absence of detergent and resistant to aggregation and oxidative inactivation at high concentrations, indicating that a short N-terminal sequence is sufficient to change the solubility and stability of the enzyme.

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Year:  2009        PMID: 19762342     DOI: 10.1093/jb/mvp145

Source DB:  PubMed          Journal:  J Biochem        ISSN: 0021-924X            Impact factor:   3.387


  11 in total

1.  Expression, crystallization and preliminary X-ray crystallographic study of ethanolamine ammonia-lyase from Escherichia coli.

Authors:  Naoki Shibata; Hiroko Tamagaki; Shungo Ohtsuki; Naoki Hieda; Keita Akita; Hirofumi Komori; Yasuhito Shomura; Shin-ichi Terawaki; Tetsuo Toraya; Noritake Yasuoka; Yoshiki Higuchi
Journal:  Acta Crystallogr Sect F Struct Biol Cryst Commun       Date:  2010-05-29

Review 2.  Prokaryotic Organelles: Bacterial Microcompartments in E. coli and Salmonella.

Authors:  Katie L Stewart; Andrew M Stewart; Thomas A Bobik
Journal:  EcoSal Plus       Date:  2020-10

3.  Electron spin-labelling of the EutC subunit in B12-dependent ethanolamine ammonia-lyase reveals dynamics and a two-state conformational equilibrium in the N-terminal, signal-sequence-associated domain.

Authors:  Benjamen Nforneh; Adonis M Bovell; Kurt Warncke
Journal:  Free Radic Res       Date:  2017-12-18

Review 4.  Engineering nanoreactors using bacterial microcompartment architectures.

Authors:  Jefferson S Plegaria; Cheryl A Kerfeld
Journal:  Curr Opin Biotechnol       Date:  2017-10-13       Impact factor: 9.740

Review 5.  Bacterial microcompartments.

Authors:  Cheryl A Kerfeld; Clement Aussignargues; Jan Zarzycki; Fei Cai; Markus Sutter
Journal:  Nat Rev Microbiol       Date:  2018-03-05       Impact factor: 60.633

6.  Crystal structures of ethanolamine ammonia-lyase complexed with coenzyme B12 analogs and substrates.

Authors:  Naoki Shibata; Hiroko Tamagaki; Naoki Hieda; Keita Akita; Hirofumi Komori; Yasuhito Shomura; Shin-Ichi Terawaki; Koichi Mori; Noritake Yasuoka; Yoshiki Higuchi; Tetsuo Toraya
Journal:  J Biol Chem       Date:  2010-06-01       Impact factor: 5.157

7.  Localization and interaction studies of the Salmonella enterica ethanolamine ammonia-lyase (EutBC), its reactivase (EutA), and the EutT corrinoid adenosyltransferase.

Authors:  Flavia G Costa; Jorge C Escalante-Semerena
Journal:  Mol Microbiol       Date:  2022-07-18       Impact factor: 3.979

8.  The structural model of Salmonella typhimurium ethanolamine ammonia-lyase directs a rational approach to the assembly of the functional [(EutB-EutC)₂]₃ oligomer from isolated subunits.

Authors:  Adonis Miguel Bovell; Kurt Warncke
Journal:  Biochemistry       Date:  2013-02-14       Impact factor: 3.162

9.  Bacterial microcompartment assembly: The key role of encapsulation peptides.

Authors:  Clément Aussignargues; Bradley C Paasch; Raul Gonzalez-Esquer; Onur Erbilgin; Cheryl A Kerfeld
Journal:  Commun Integr Biol       Date:  2015-06-23

10.  A genome-scale metabolic flux model of Escherichia coli K-12 derived from the EcoCyc database.

Authors:  Daniel S Weaver; Ingrid M Keseler; Amanda Mackie; Ian T Paulsen; Peter D Karp
Journal:  BMC Syst Biol       Date:  2014-06-30
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