Literature DB >> 19758990

Probing the catalytic sites and activation mechanism of photoreceptor phosphodiesterase using radiolabeled phosphodiesterase inhibitors.

Yu-Ting Liu1, Suzanne L Matte, Jackie D Corbin, Sharron H Francis, Rick H Cote.   

Abstract

Retinal photoreceptor phosphodiesterase (PDE6) is unique among the phosphodiesterase enzyme family not only for its catalytic heterodimer but also for its regulatory gamma-subunits (Pgamma) whose inhibitory action is released upon binding to the G-protein transducin. It is generally assumed that during visual excitation both catalytic sites are relieved of Pgamma inhibition upon binding of two activated transducin molecules. Because PDE6 shares structural and pharmacological similarities with PDE5, we utilized radiolabeled PDE5 inhibitors to probe the catalytic sites of PDE6. The membrane filtration assay we used to quantify [(3)H]vardenafil binding to PDE6 required histone II-AS to stabilize drug binding to the active site. Under these conditions, [(3)H]vardenafil binds stoichiometrically to both the alpha- and beta-subunits of the activated PDE6 heterodimer. [(3)H]vardenafil fails to bind to either the PDE6 holoenzyme or the PDE6 catalytic dimer reconstituted with Pgamma, consistent with Pgamma blocking access to the drug-binding sites. Following transducin activation of membrane-associated PDE6 holoenzyme, [(3)H]vardenafil binding increases in proportion to the extent of PDE6 activation. Both [(3)H]vardenafil binding and hydrolytic activity of transducin-activated PDE6 fail to exceed 50% of the value for the PDE6 catalytic dimer. However, adding a 1000-fold excess of activated transducin can stimulate the hydrolytic activity of PDE6 to its maximum extent. These results demonstrate that both subunits of the PDE6 heterodimer are able to bind ligands to the enzyme active site. Furthermore, transducin relieves Pgamma inhibition of PDE6 in a biphasic manner, with only one-half of the maximum PDE6 activity efficiently attained during visual excitation.

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Year:  2009        PMID: 19758990      PMCID: PMC2797223          DOI: 10.1074/jbc.M109.018606

Source DB:  PubMed          Journal:  J Biol Chem        ISSN: 0021-9258            Impact factor:   5.157


  48 in total

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Review 3.  Beyond counting photons: trials and trends in vertebrate visual transduction.

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4.  The inhibitory gamma subunit of the rod cGMP phosphodiesterase binds the catalytic subunits in an extended linear structure.

Authors:  Lian-Wang Guo; Hakim Muradov; Abdol R Hajipour; Michael K Sievert; Nikolai O Artemyev; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2006-04-04       Impact factor: 5.157

5.  Efficacy and selectivity of phosphodiesterase-targeted drugs in inhibiting photoreceptor phosphodiesterase (PDE6) in retinal photoreceptors.

Authors:  Xiujun Zhang; Qing Feng; Rick H Cote
Journal:  Invest Ophthalmol Vis Sci       Date:  2005-09       Impact factor: 4.799

6.  Purification, reconstitution on lipid vesicles, and assays of PDE6 and its activator G protein, transducin.

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7.  Cyclic guanosine 5'-monophosphate binding to regulatory GAF domains of photoreceptor phosphodiesterase.

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8.  Purification of PDE6 isozymes from mammalian retina.

Authors:  Dana C Pentia; Suzanne Hosier; Rachel A Collupy; Beverly A Valeriani; Rick H Cote
Journal:  Methods Mol Biol       Date:  2005

9.  Solution structure of the cGMP binding GAF domain from phosphodiesterase 5: insights into nucleotide specificity, dimerization, and cGMP-dependent conformational change.

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10.  Role for the target enzyme in deactivation of photoreceptor G protein in vivo.

Authors:  S H Tsang; M E Burns; P D Calvert; P Gouras; D A Baylor; S P Goff; V Y Arshavsky
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  9 in total

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Journal:  J Biol Chem       Date:  2012-04-18       Impact factor: 5.157

Review 2.  Speed, sensitivity, and stability of the light response in rod and cone photoreceptors: facts and models.

Authors:  Juan I Korenbrot
Journal:  Prog Retin Eye Res       Date:  2012-05-29       Impact factor: 21.198

3.  Complementary interactions of the rod PDE6 inhibitory subunit with the catalytic subunits and transducin.

Authors:  Lian-Wang Guo; Abdol R Hajipour; Arnold E Ruoho
Journal:  J Biol Chem       Date:  2010-03-15       Impact factor: 5.157

4.  Rod phosphodiesterase-6 PDE6A and PDE6B subunits are enzymatically equivalent.

Authors:  Hakim Muradov; Kimberly K Boyd; Nikolai O Artemyev
Journal:  J Biol Chem       Date:  2010-10-12       Impact factor: 5.157

5.  Structural characterization of the rod cGMP phosphodiesterase 6.

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Review 6.  Photoreceptor phosphodiesterase (PDE6): activation and inactivation mechanisms during visual transduction in rods and cones.

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Journal:  Pflugers Arch       Date:  2021-04-15       Impact factor: 4.458

7.  Origins of the phototransduction delay as inferred from stochastic and deterministic simulation of the amplification cascade.

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8.  Investigation of PDE5/PDE6 and PDE5/PDE11 selective potent tadalafil-like PDE5 inhibitors using combination of molecular modeling approaches, molecular fingerprint-based virtual screening protocols and structure-based pharmacophore development.

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Journal:  J Enzyme Inhib Med Chem       Date:  2017-12       Impact factor: 5.051

Review 9.  Photoreceptor Phosphodiesterase (PDE6): Structure, Regulatory Mechanisms, and Implications for Treatment of Retinal Diseases.

Authors:  Rick H Cote; Richa Gupta; Michael J Irwin; Xin Wang
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  9 in total

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