Literature DB >> 19757186

A comparative analysis of the complete mitochondrial genome of the Eurasian otter Lutra lutra (Carnivora; Mustelidae).

Jang-Seu Ki1, Dae-Sik Hwang, Tae-Jin Park, Sang-Hoon Han, Jae-Seong Lee.   

Abstract

Otter populations are declining throughout the world and most otter species are considered endangered. Molecular methods are suitable tools for population genetic research on endangered species. In the present study, we analyzed the complete mitochondrial genome (mitogenome) sequence of the Eurasian otter Lutra lutra. The mitochondrial DNA sequence of the Eurasian otter is 16,505 bp in length and consists of 13 protein-coding genes, 22 tRNAs, 2 rRNAs, and a control region (CR). The CR sequence of otters from Europe and Asia showed nearly identical numbers and nucleotide sequences of minisatellites. Phylogenetic analysis of Mustelidae mitogenomes, including individual genes, revealed that Lutrinae and Mustelinae form a clade, and that L. lutra and Enhydra lutris are sister taxa within the Lutrinae. Phylogenetic analyses revealed that of the 13 mitochondrial protein-coding genes, ND5 is the most reliable marker for analysis of phylogenetic relationships within the Mustelidae.

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Year:  2009        PMID： 19757186     DOI： 10.1007/s11033-009-9641-0

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN： 0301-4851            Impact factor:   2.316


  47 in total

1.  Structure of the mitochondrial control region of the Eurasian otter (Lutra lutra; Carnivora, Mustelidae): patterns of genetic heterogeneity and implications for conservation of the species in Italy.

Authors:  V Ketmaier; C Bernardini
Journal:  J Hered       Date:  2005-02-24       Impact factor: 2.645

2.  A phylogeny of the Caniformia (order Carnivora) based on 12 complete protein-coding mitochondrial genes.

Authors:  Isabelle Delisle; Curtis Strobeck
Journal:  Mol Phylogenet Evol       Date:  2005-10       Impact factor: 4.286

3.  Pinniped phylogeny and a new hypothesis for their origin and dispersal.

Authors:  Ulfur Arnason; Anette Gullberg; Axel Janke; Morgan Kullberg; Niles Lehman; Evgeny A Petrov; Risto Väinölä
Journal:  Mol Phylogenet Evol       Date:  2006-05-26       Impact factor: 4.286

4.  Microsatellite primers for the Eurasian otter.

Authors:  J F Dallas; S B Piertney
Journal:  Mol Ecol       Date:  1998-09       Impact factor: 6.185

5.  The complete nucleotide sequence of a snake (Dinodon semicarinatus) mitochondrial genome with two identical control regions.

Authors:  Y Kumazawa; H Ota; M Nishida; T Ozawa
Journal:  Genetics       Date:  1998-09       Impact factor: 4.562

6.  Mammalian mitochondrial D-loop region structural analysis: identification of new conserved sequences and their functional and evolutionary implications.

Authors:  E Sbisà; F Tanzariello; A Reyes; G Pesole; C Saccone
Journal:  Gene       Date:  1997-12-31       Impact factor: 3.688

7.  Mitochondrial DNA variation in the European otter (Lutra lutra) and the use of spatial autocorrelation analysis in conservation.

Authors:  I Cassens; R Tiedemann; F Suchentrunk; G B Hartl
Journal:  J Hered       Date:  2000 Jan-Feb       Impact factor: 2.645

8.  Patterns of nucleotide composition at fourfold degenerate sites of animal mitochondrial genomes.

Authors:  N T Perna; T D Kocher
Journal:  J Mol Evol       Date:  1995-09       Impact factor: 2.395

9.  Sequence and organization of the human mitochondrial genome.

Authors:  S Anderson; A T Bankier; B G Barrell; M H de Bruijn; A R Coulson; J Drouin; I C Eperon; D P Nierlich; B A Roe; F Sanger; P H Schreier; A J Smith; R Staden; I G Young
Journal:  Nature       Date:  1981-04-09       Impact factor: 49.962

10.  Length and sequence variation in evening bat D-loop mtDNA.

Authors:  G S Wilkinson; A M Chapman
Journal:  Genetics       Date:  1991-07       Impact factor: 4.562
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  13 in total

1.  The complete mitochondrial genomes of three cestode species of Taenia infecting animals and humans.

Authors:  Guo-Hua Liu; Rui-Qing Lin; Ming-Wei Li; Wei Liu; Yi Liu; Zi-Guo Yuan; Hui-Qun Song; Guang-Hui Zhao; Kou-Xing Zhang; Xing-Quan Zhu
Journal:  Mol Biol Rep       Date:  2010-10-05       Impact factor: 2.316

2.  A description of the complete mitochondrial genomes of Amphiporus formidabilis, Prosadenoporus spectaculum and Nipponnemertes punctatula (Nemertea: Hoplonemertea: Monostilifera).

Authors:  Wen-Yan Sun; Shi-Chun Sun
Journal:  Mol Biol Rep       Date:  2014-06-18       Impact factor: 2.316

3.  The complete mitochondrial genome and phylogenetic analysis of the Debao pony (Equus caballus).

Authors:  Qinyang Jiang; Yingming Wei; Yanna Huang; Hesheng Jiang; Yafen Guo; Ganqiu Lan; Joshua Liao
Journal:  Mol Biol Rep       Date:  2011-01       Impact factor: 2.316

4.  The complete mitochondrial genome of dhole Cuon alpinus: phylogenetic analysis and dating evolutionary divergence within Canidae.

Authors:  Honghai Zhang; Lei Chen
Journal:  Mol Biol Rep       Date:  2010-09-22       Impact factor: 2.316

5.  Mitochondrial DNA diversity and PCR-based sex determination of Irrawaddy dolphin (Orcaella brevirostris) from Chilika Lagoon, India.

Authors:  P Jayasankar; A Patel; M Khan; P Das; S Panda
Journal:  Mol Biol Rep       Date:  2010-09-21       Impact factor: 2.316

6.  The complete mitochondrial genome of the grand jackknife clam, Solen grandis (Bivalvia: Solenidae): a novel gene order and unusual non-coding region.

Authors:  Yang Yuan; Qi Li; Lingfeng Kong; Hong Yu
Journal:  Mol Biol Rep       Date:  2011-05-20       Impact factor: 2.316

7.  Microsatellite loci and the complete mitochondrial DNA sequence characterized through next generation sequencing and de novo genome assembly for the critically endangered orange-bellied parrot, Neophema chrysogaster.

Authors:  Adam D Miller; Robert T Good; Rhys A Coleman; Melanie L Lancaster; Andrew R Weeks
Journal:  Mol Biol Rep       Date:  2012-11-01       Impact factor: 2.316

8.  The complete mitogenome of Cylindrus obtusus (Helicidae, Ariantinae) using Illumina next generation sequencing.

Authors:  Dick S J Groenenberg; Walter Pirovano; Edmund Gittenberger; Menno Schilthuizen
Journal:  BMC Genomics       Date:  2012-03-26       Impact factor: 3.969

9.  Genetic Diversity of mtDNA D-loop and Maternal Origin of Three Chinese Native Horse Breeds.

Authors:  Tao Zhang; Hongzhao Lu; Chen Chen; Hai Jiang; Sanqiao Wu
Journal:  Asian-Australas J Anim Sci       Date:  2012-07       Impact factor: 2.509

10.  First mitochondrial genome for the red crab (Charybdis feriata) with implication of phylogenomics and population genetics.

Authors:  Hongyu Ma; Chunyan Ma; Chenhong Li; Jianxue Lu; Xiong Zou; Yangyang Gong; Wei Wang; Wei Chen; Lingbo Ma; Lianjun Xia
Journal:  Sci Rep       Date:  2015-07-30       Impact factor: 4.379
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