Literature DB >> 19754394

Structure-based drug design strategies in medicinal chemistry.

Adriano D Andricopulo1, Lívia B Salum, Donald J Abraham.   

Abstract

A broad variety of medicinal chemistry approaches can be used for the identification of hits, generation of leads, as well as to accelerate the development of high quality drug candidates. Structure-based drug design (SBDD) methods are becoming increasingly powerful, versatile and more widely used. This review summarizes current developments in structure-based virtual screening and receptor-based pharmacophores, highlighting achievements as well as challenges, along with the value of structure-based lead optimization, with emphasis on recent examples of successful applications for the identification of novel active compounds.

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Year:  2009        PMID: 19754394     DOI: 10.2174/156802609789207127

Source DB:  PubMed          Journal:  Curr Top Med Chem        ISSN: 1568-0266            Impact factor:   3.295


  29 in total

1.  Virtual screening using a conformationally flexible target protein: models for ligand binding to p38α MAPK.

Authors:  Natalie B Vinh; Jamie S Simpson; Peter J Scammells; David K Chalmers
Journal:  J Comput Aided Mol Des       Date:  2012-04-20       Impact factor: 3.686

2.  Identification of the binding site of an allosteric ligand using STD-NMR, docking, and CORCEMA-ST calculations.

Authors:  Wei Zhang; Rongbao Li; Ronald Shin; Yimin Wang; Indira Padmalayam; Ling Zhai; N Rama Krishna
Journal:  ChemMedChem       Date:  2013-07-25       Impact factor: 3.466

3.  Targeting the target of rapamycin (TOR): looking to mother nature.

Authors:  Eric K Rowinsky
Journal:  Target Oncol       Date:  2011-04-27       Impact factor: 4.493

4.  Discovery of thienoquinolone derivatives as selective and ATP non-competitive CDK5/p25 inhibitors by structure-based virtual screening.

Authors:  Arindam Chatterjee; Stephen J Cutler; Robert J Doerksen; Ikhlas A Khan; John S Williamson
Journal:  Bioorg Med Chem       Date:  2014-09-28       Impact factor: 3.641

5.  Insights from free-energy calculations: protein conformational equilibrium, driving forces, and ligand-binding modes.

Authors:  Yu-Ming M Huang; Wei Chen; Michael J Potter; Chia-En A Chang
Journal:  Biophys J       Date:  2012-07-17       Impact factor: 4.033

6.  Discovery of Novel α4β2 Neuronal Nicotinic Receptor Modulators through Structure-Based Virtual Screening.

Authors:  Kiran V Mahasenan; Ryan E Pavlovicz; Brandon J Henderson; Tatiana F González-Cestari; Bitna Yi; Dennis B McKay; Chenglong Li
Journal:  ACS Med Chem Lett       Date:  2011-09-18       Impact factor: 4.345

Review 7.  Design of Experiments As a Tool for Optimization in Recombinant Protein Biotechnology: From Constructs to Crystals.

Authors:  Christos Papaneophytou
Journal:  Mol Biotechnol       Date:  2019-12       Impact factor: 2.695

Review 8.  Challenges and opportunities for new protein crystallization strategies in structure-based drug design.

Authors:  Jessica Lynn Grey; David H Thompson
Journal:  Expert Opin Drug Discov       Date:  2010-11       Impact factor: 6.098

Review 9.  Bioinformatics and variability in drug response: a protein structural perspective.

Authors:  Jennifer L Lahti; Grace W Tang; Emidio Capriotti; Tianyun Liu; Russ B Altman
Journal:  J R Soc Interface       Date:  2012-05-02       Impact factor: 4.118

10.  Modeling Protein-Ligand Binding by Mining Minima.

Authors:  Wei Chen; Michael K Gilson; Simon P Webb; Michael J Potter
Journal:  J Chem Theory Comput       Date:  2010-10-08       Impact factor: 6.006

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