Literature DB >> 24936233

Discovery of Novel α4β2 Neuronal Nicotinic Receptor Modulators through Structure-Based Virtual Screening.

Kiran V Mahasenan1, Ryan E Pavlovicz1, Brandon J Henderson1, Tatiana F González-Cestari1, Bitna Yi1, Dennis B McKay1, Chenglong Li1.   

Abstract

We performed a hierarchical structure-based virtual screening utilizing a comparative model of the human α4β2 neuronal nicotinic acetylcholine receptor (nAChR) extracellular domain. Compounds were selected for experimental testing based on structural diversity, binding pocket location, and standard error of the free energy scoring function used in the screening. Four of the eleven in silico hit compounds showed promising activity with low micromolar IC50 values in a calcium accumulation assay. Two of the antagonists were also proven to be selective for human α4β2 vs human α3β4 nAChRs. This is the first report of successful discovery of novel nAChR antagonists through the use of structure-based virtual screening with a human nAChR homology model. These compounds may serve as potential novel scaffolds for further development of selective nAChR antagonists.

Entities:  

Keywords:  AChBP; allosteric; nAChR; nicotinic acetylcholine receptor; noncompetitive antagonists; virtual screening

Year:  2011        PMID: 24936233      PMCID: PMC4056858          DOI: 10.1021/ml2001714

Source DB:  PubMed          Journal:  ACS Med Chem Lett        ISSN: 1948-5875            Impact factor:   4.345


  27 in total

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Authors:  Thomas A Halgren; Robert B Murphy; Richard A Friesner; Hege S Beard; Leah L Frye; W Thomas Pollard; Jay L Banks
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

2.  Glide: a new approach for rapid, accurate docking and scoring. 1. Method and assessment of docking accuracy.

Authors:  Richard A Friesner; Jay L Banks; Robert B Murphy; Thomas A Halgren; Jasna J Klicic; Daniel T Mainz; Matthew P Repasky; Eric H Knoll; Mee Shelley; Jason K Perry; David E Shaw; Perry Francis; Peter S Shenkin
Journal:  J Med Chem       Date:  2004-03-25       Impact factor: 7.446

3.  Extra precision glide: docking and scoring incorporating a model of hydrophobic enclosure for protein-ligand complexes.

Authors:  Richard A Friesner; Robert B Murphy; Matthew P Repasky; Leah L Frye; Jeremy R Greenwood; Thomas A Halgren; Paul C Sanschagrin; Daniel T Mainz
Journal:  J Med Chem       Date:  2006-10-19       Impact factor: 7.446

Review 4.  Towards the development of universal, fast and highly accurate docking/scoring methods: a long way to go.

Authors:  N Moitessier; P Englebienne; D Lee; J Lawandi; C R Corbeil
Journal:  Br J Pharmacol       Date:  2007-11-26       Impact factor: 8.739

5.  Identifying and characterizing binding sites and assessing druggability.

Authors:  Thomas A Halgren
Journal:  J Chem Inf Model       Date:  2009-02       Impact factor: 4.956

6.  Analogs of methyllycaconitine as novel noncompetitive inhibitors of nicotinic receptors: pharmacological characterization, computational modeling, and pharmacophore development.

Authors:  Dennis B McKay; Cheng Chang; Tatiana F González-Cestari; Susan B McKay; Raed A El-Hajj; Darrell L Bryant; Michael X Zhu; Peter W Swaan; Kristjan M Arason; Aravinda B Pulipaka; Crina M Orac; Stephen C Bergmeier
Journal:  Mol Pharmacol       Date:  2007-02-16       Impact factor: 4.436

Review 7.  Subtypes of nicotinic acetylcholine receptors in nicotine reward, dependence, and withdrawal: evidence from genetically modified mice.

Authors:  Christie D Fowler; Michael A Arends; Paul J Kenny
Journal:  Behav Pharmacol       Date:  2008-09       Impact factor: 2.293

Review 8.  Mammalian nicotinic acetylcholine receptors: from structure to function.

Authors:  Edson X Albuquerque; Edna F R Pereira; Manickavasagom Alkondon; Scott W Rogers
Journal:  Physiol Rev       Date:  2009-01       Impact factor: 37.312

9.  Use of acetylcholine binding protein in the search for novel alpha7 nicotinic receptor ligands. In silico docking, pharmacological screening, and X-ray analysis.

Authors:  Chris Ulens; Atilla Akdemir; Aldo Jongejan; Rene van Elk; Sonia Bertrand; Anastassis Perrakis; Rob Leurs; August B Smit; Titia K Sixma; Daniel Bertrand; Iwan J P de Esch
Journal:  J Med Chem       Date:  2009-04-23       Impact factor: 7.446

Review 10.  Nicotinic receptor-mediated neuroprotection in neurodegenerative disease models.

Authors:  Shun Shimohama
Journal:  Biol Pharm Bull       Date:  2009-03       Impact factor: 2.233

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  7 in total

1.  Structure-activity relationship studies of sulfonylpiperazine analogues as novel negative allosteric modulators of human neuronal nicotinic receptors.

Authors:  Brandon J Henderson; Daniel J Carper; Tatiana F González-Cestari; Bitna Yi; Kiran Mahasenan; Ryan E Pavlovicz; Martin L Dalefield; Robert S Coleman; Chenglong Li; Dennis B McKay
Journal:  J Med Chem       Date:  2011-11-18       Impact factor: 7.446

Review 2.  In Silico Studies in Drug Research Against Neurodegenerative Diseases.

Authors:  Farahnaz Rezaei Makhouri; Jahan B Ghasemi
Journal:  Curr Neuropharmacol       Date:  2018       Impact factor: 7.363

3.  Defining the putative inhibitory site for a selective negative allosteric modulator of human α4β2 neuronal nicotinic receptors.

Authors:  Brandon J Henderson; Tatiana F González-Cestari; Bitna Yi; Ryan E Pavlovicz; R Thomas Boyd; Chenglong Li; Stephen C Bergmeier; Dennis B McKay
Journal:  ACS Chem Neurosci       Date:  2012-05-25       Impact factor: 4.418

4.  Selecting, Acquiring, and Using Small Molecule Libraries for High-Throughput Screening.

Authors:  Sivaraman Dandapani; Gerard Rosse; Noel Southall; Joseph M Salvino; Craig J Thomas
Journal:  Curr Protoc Chem Biol       Date:  2012-09-01

5.  Discovery of benzamide analogs as negative allosteric modulators of human neuronal nicotinic receptors: pharmacophore modeling and structure-activity relationship studies.

Authors:  Bitna Yi; Sihui Long; Tatiana F González-Cestari; Brandon J Henderson; Ryan E Pavlovicz; Karl Werbovetz; Chenglong Li; Dennis B McKay
Journal:  Bioorg Med Chem       Date:  2013-04-06       Impact factor: 3.641

6.  Comparing neural-network scoring functions and the state of the art: applications to common library screening.

Authors:  Jacob D Durrant; Aaron J Friedman; Kathleen E Rogers; J Andrew McCammon
Journal:  J Chem Inf Model       Date:  2013-07-11       Impact factor: 4.956

7.  Identification by virtual screening and functional characterisation of novel positive and negative allosteric modulators of the α7 nicotinic acetylcholine receptor.

Authors:  Charles L C Smelt; Victoria R Sanders; Joseph Newcombe; Richard P Burt; Tom D Sheppard; Maya Topf; Neil S Millar
Journal:  Neuropharmacology       Date:  2018-07-20       Impact factor: 5.250

  7 in total

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