Literature DB >> 19748338

Quantitative determination of the conformational properties of partially folded and intrinsically disordered proteins using NMR dipolar couplings.

Malene Ringkjøbing Jensen1, Phineus R L Markwick, Sebastian Meier, Christian Griesinger, Markus Zweckstetter, Stephan Grzesiek, Pau Bernadó, Martin Blackledge.   

Abstract

Intrinsically disordered proteins (IDPs) inhabit a conformational landscape that is too complex to be described by classical structural biology, posing an entirely new set of questions concerning the molecular understanding of functional biology. The characterization of the conformational properties of IDPs, and the elucidation of the role they play in molecular function, is therefore one of the major challenges remaining for modern structural biology. NMR is the technique of choice for studying this class of proteins, providing information about structure, flexibility, and interactions at atomic resolution even in completely disordered states. In particular, residual dipolar couplings (RDCs) have been shown to be uniquely sensitive and powerful tools for characterizing local and long-range structural behavior in disordered proteins. In this review we describe recent applications of RDCs to quantitatively describe the level of local structure and transient long-range order in IDPs involved in viral replication, neurodegenerative disease, and cancer.

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Year:  2009        PMID: 19748338     DOI: 10.1016/j.str.2009.08.001

Source DB:  PubMed          Journal:  Structure        ISSN: 0969-2126            Impact factor:   5.006


  46 in total

1.  Mapping the conformational mobility of multidomain proteins.

Authors:  Martin Blackledge
Journal:  Biophys J       Date:  2010-05-19       Impact factor: 4.033

2.  Protein alignment using cellulose nanocrystals: practical considerations and range of application.

Authors:  Alexey Y Denisov; Elisabeth Kloser; Derek G Gray; Anthony K Mittermaier
Journal:  J Biomol NMR       Date:  2010-05-12       Impact factor: 2.835

Review 3.  Understanding protein non-folding.

Authors:  Vladimir N Uversky; A Keith Dunker
Journal:  Biochim Biophys Acta       Date:  2010-02-01

4.  The arginine-rich RNA-binding motif of HIV-1 Rev is intrinsically disordered and folds upon RRE binding.

Authors:  Fabio Casu; Brendan M Duggan; Mirko Hennig
Journal:  Biophys J       Date:  2013-08-20       Impact factor: 4.033

Review 5.  Characterizing weak protein-protein complexes by NMR residual dipolar couplings.

Authors:  Malene Ringkjøbing Jensen; Jose-Luis Ortega-Roldan; Loïc Salmon; Nico van Nuland; Martin Blackledge
Journal:  Eur Biophys J       Date:  2011-06-28       Impact factor: 1.733

6.  Intrinsic disorder in measles virus nucleocapsids.

Authors:  Malene Ringkjøbing Jensen; Guillaume Communie; Euripedes Almeida Ribeiro; Nicolas Martinez; Ambroise Desfosses; Loïc Salmon; Luca Mollica; Frank Gabel; Marc Jamin; Sonia Longhi; Rob W H Ruigrok; Martin Blackledge
Journal:  Proc Natl Acad Sci U S A       Date:  2011-05-25       Impact factor: 11.205

Review 7.  NMR-based investigations into target DNA search processes of proteins.

Authors:  Junji Iwahara; Levani Zandarashvili; Catherine A Kemme; Alexandre Esadze
Journal:  Methods       Date:  2018-05-10       Impact factor: 3.608

Review 8.  Describing sequence-ensemble relationships for intrinsically disordered proteins.

Authors:  Albert H Mao; Nicholas Lyle; Rohit V Pappu
Journal:  Biochem J       Date:  2013-01-15       Impact factor: 3.857

9.  Sequence- and Temperature-Dependent Properties of Unfolded and Disordered Proteins from Atomistic Simulations.

Authors:  Gül H Zerze; Robert B Best; Jeetain Mittal
Journal:  J Phys Chem B       Date:  2015-11-10       Impact factor: 2.991

10.  Single-molecule studies of the Im7 folding landscape.

Authors:  Sara D Pugh; Christopher Gell; D Alastair Smith; Sheena E Radford; David J Brockwell
Journal:  J Mol Biol       Date:  2010-03-06       Impact factor: 5.469

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