Literature DB >> 19747886

Structural basis for the lack of opposite base specificity of Clostridium acetobutylicum 8-oxoguanine DNA glycosylase.

Frédérick Faucher1, Susan S Wallace, Sylvie Doublié.   

Abstract

pan class="Chemical">7,8-Dihydro-8-oxoguanine (pan class="Chemical">8-oxoG) is the major oxidative product of guanine and the most prevalent base lesion observed in DNA molecules. Because 8-oxoG has the capability to form a Hoogsteen pair with adenine (8-oxoG:A) in addition to a normal Watson-Crick pair with cytosine (8-oxoG:C), this lesion can lead to a G:C-->T:A transversion after replication. However, 8-oxoG is recognized and excised by the 8-oxoguanine DNA glycosylase (Ogg) of the base excision repair pathway. Members of the Ogg1 family usually display a strong preference for a C opposite the lesion. In contrast, the atypical Ogg1 from Clostridium actetobutylicum (CacOgg) can excise 8-oxoG when paired with either one of the four bases, albeit with a preference for C and A. Here we describe the first high-resolution crystal structures of CacOgg in complex with duplex DNA containing the 8-oxoG lesion paired to cytosine and to adenine. A structural comparison with human OGG1 provides a rationale for the lack of opposite base specificity displayed by the bacterial Ogg.

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Year:  2009        PMID: 19747886      PMCID: PMC2779579          DOI: 10.1016/j.dnarep.2009.08.002

Source DB:  PubMed          Journal:  DNA Repair (Amst)        ISSN: 1568-7856


  36 in total

1.  Molecular cloning and functional expression of a human cDNA encoding the antimutator enzyme 8-hydroxyguanine-DNA glycosylase.

Authors:  T Roldán-Arjona; Y F Wei; K C Carter; A Klungland; C Anselmino; R P Wang; M Augustus; T Lindahl
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

2.  Cloning and characterization of hOGG1, a human homolog of the OGG1 gene of Saccharomyces cerevisiae.

Authors:  J P Radicella; C Dherin; C Desmaze; M S Fox; S Boiteux
Journal:  Proc Natl Acad Sci U S A       Date:  1997-07-22       Impact factor: 11.205

3.  Structural characterization of human 8-oxoguanine DNA glycosylase variants bearing active site mutations.

Authors:  Christopher T Radom; Anirban Banerjee; Gregory L Verdine
Journal:  J Biol Chem       Date:  2006-11-16       Impact factor: 5.157

4.  Structural basis for recognition and repair of the endogenous mutagen 8-oxoguanine in DNA.

Authors:  S D Bruner; D P Norman; G L Verdine
Journal:  Nature       Date:  2000-02-24       Impact factor: 49.962

Review 5.  Repair and genetic consequences of endogenous DNA base damage in mammalian cells.

Authors:  Deborah E Barnes; Tomas Lindahl
Journal:  Annu Rev Genet       Date:  2004       Impact factor: 16.830

Review 6.  Base-excision repair of oxidative DNA damage.

Authors:  Sheila S David; Valerie L O'Shea; Sucharita Kundu
Journal:  Nature       Date:  2007-06-21       Impact factor: 49.962

7.  Cloning of a human homolog of the yeast OGG1 gene that is involved in the repair of oxidative DNA damage.

Authors:  K Arai; K Morishita; K Shinmura; T Kohno; S R Kim; T Nohmi; M Taniwaki; S Ohwada; J Yokota
Journal:  Oncogene       Date:  1997-06-12       Impact factor: 9.867

8.  Reciprocal "flipping" underlies substrate recognition and catalytic activation by the human 8-oxo-guanine DNA glycosylase.

Authors:  Magnar Bjørås; Erling Seeberg; Luisa Luna; Laurence H Pearl; Tracey E Barrett
Journal:  J Mol Biol       Date:  2002-03-22       Impact factor: 5.469

Review 9.  Radiation damage in macromolecular cryocrystallography.

Authors:  Raimond B G Ravelli; Elspeth F Garman
Journal:  Curr Opin Struct Biol       Date:  2006-08-30       Impact factor: 6.809

10.  Mechanistic studies of ionizing radiation and oxidative mutagenesis: genetic effects of a single 8-hydroxyguanine (7-hydro-8-oxoguanine) residue inserted at a unique site in a viral genome.

Authors:  M L Wood; M Dizdaroglu; E Gajewski; J M Essigmann
Journal:  Biochemistry       Date:  1990-07-31       Impact factor: 3.162

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  3 in total

Review 1.  Recent advances in the structural mechanisms of DNA glycosylases.

Authors:  Sonja C Brooks; Suraj Adhikary; Emily H Rubinson; Brandt F Eichman
Journal:  Biochim Biophys Acta       Date:  2012-10-14

2.  The C-terminal lysine of Ogg2 DNA glycosylases is a major molecular determinant for guanine/8-oxoguanine distinction.

Authors:  Frédérick Faucher; Susan S Wallace; Sylvie Doublié
Journal:  J Mol Biol       Date:  2010-01-18       Impact factor: 5.469

Review 3.  8-oxoguanine DNA glycosylases: one lesion, three subfamilies.

Authors:  Frédérick Faucher; Sylvie Doublié; Zongchao Jia
Journal:  Int J Mol Sci       Date:  2012-06-01       Impact factor: 6.208

  3 in total

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