Literature DB >> 19745812

The E2F functional analogue SBF recruits the Rpd3(L) HDAC, via Whi5 and Stb1, and the FACT chromatin reorganizer, to yeast G1 cyclin promoters.

Shinya Takahata1, Yaxin Yu, David J Stillman.   

Abstract

Regulation of the CLN1 and CLN2 G1 cyclin genes controls cell cycle progression. The SBF activator binds to these promoters but is kept inactive by the Whi5 and Stb1 inhibitors. The Cdc28 cyclin-dependent kinase phosphorylates Whi5, ending the inhibition. Our chromatin immunoprecipitation (ChIP) experiments show that SBF, Whi5 and Stb1 recruit both Cdc28 and the Rpd3(L) histone deacetylase to CLN promoters, extending the analogy with mammalian G1 cyclin promoters in which Rb recruits histone deacetylases. Finally, we show that the SBF subunit Swi6 recruits the FACT chromatin reorganizer to SBF- and MBF-regulated genes. Mutations affecting FACT reduce the transient nucleosome eviction seen at these promoters during a normal cell cycle and also reduce expression. Temperature-sensitive mutations affecting FACT and Cdc28 can be suppressed by disruption of STB1 and WHI5, suggesting that one critical function of FACT and Cdc28 is overcoming chromatin repression at G1 cyclin promoters. Thus, SBF recruits complexes to promoters that either enhance (FACT) or repress (Rpd3L) accessibility to chromatin, and also recruits the kinase that activates START.

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Year:  2009        PMID: 19745812      PMCID: PMC2776103          DOI: 10.1038/emboj.2009.270

Source DB:  PubMed          Journal:  EMBO J        ISSN: 0261-4189            Impact factor:   11.598


  53 in total

1.  Serial regulation of transcriptional regulators in the yeast cell cycle.

Authors:  I Simon; J Barnett; N Hannett; C T Harbison; N J Rinaldi; T L Volkert; J J Wyrick; J Zeitlinger; D K Gifford; T S Jaakkola; R A Young
Journal:  Cell       Date:  2001-09-21       Impact factor: 41.582

2.  Spt16-Pob3 and the HMG protein Nhp6 combine to form the nucleosome-binding factor SPN.

Authors:  T Formosa; P Eriksson; J Wittmeyer; J Ginn; Y Yu; D J Stillman
Journal:  EMBO J       Date:  2001-07-02       Impact factor: 11.598

3.  A yeast taf17 mutant requires the Swi6 transcriptional activator for viability and shows defects in cell cycle-regulated transcription.

Authors:  N Macpherson; V Measday; L Moore; B Andrews
Journal:  Genetics       Date:  2000-04       Impact factor: 4.562

Review 4.  Cell cycle-dependent transcription in yeast: promoters, transcription factors, and transcriptomes.

Authors:  Curt Wittenberg; Steven I Reed
Journal:  Oncogene       Date:  2005-04-18       Impact factor: 9.867

5.  The Swi5 activator recruits the Mediator complex to the HO promoter without RNA polymerase II.

Authors:  L T Bhoite; Y Yu; D J Stillman
Journal:  Genes Dev       Date:  2001-09-15       Impact factor: 11.361

6.  POB3 is required for both transcription and replication in the yeast Saccharomyces cerevisiae.

Authors:  M B Schlesinger; T Formosa
Journal:  Genetics       Date:  2000-08       Impact factor: 4.562

7.  Stb1 collaborates with other regulators to modulate the G1-specific transcriptional circuit.

Authors:  Robertus A M de Bruin; Tatyana I Kalashnikova; Curt Wittenberg
Journal:  Mol Cell Biol       Date:  2008-09-15       Impact factor: 4.272

8.  Proteomics of the eukaryotic transcription machinery: identification of proteins associated with components of yeast TFIID by multidimensional mass spectrometry.

Authors:  Steven L Sanders; Jennifer Jennings; Adrian Canutescu; Andrew J Link; P Anthony Weil
Journal:  Mol Cell Biol       Date:  2002-07       Impact factor: 4.272

9.  Systematic identification of pathways that couple cell growth and division in yeast.

Authors:  Paul Jorgensen; Joy L Nishikawa; Bobby-Joe Breitkreutz; Mike Tyers
Journal:  Science       Date:  2002-06-27       Impact factor: 47.728

10.  A library of yeast transcription factor motifs reveals a widespread function for Rsc3 in targeting nucleosome exclusion at promoters.

Authors:  Gwenael Badis; Esther T Chan; Harm van Bakel; Lourdes Pena-Castillo; Desiree Tillo; Kyle Tsui; Clayton D Carlson; Andrea J Gossett; Michael J Hasinoff; Christopher L Warren; Marinella Gebbia; Shaheynoor Talukder; Ally Yang; Sanie Mnaimneh; Dimitri Terterov; David Coburn; Ai Li Yeo; Zhen Xuan Yeo; Neil D Clarke; Jason D Lieb; Aseem Z Ansari; Corey Nislow; Timothy R Hughes
Journal:  Mol Cell       Date:  2008-12-26       Impact factor: 17.970

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  49 in total

Review 1.  Evolution of networks and sequences in eukaryotic cell cycle control.

Authors:  Frederick R Cross; Nicolas E Buchler; Jan M Skotheim
Journal:  Philos Trans R Soc Lond B Biol Sci       Date:  2011-12-27       Impact factor: 6.237

2.  A Role for Mediator Core in Limiting Coactivator Recruitment in Saccharomyces cerevisiae.

Authors:  Robert M Yarrington; Yaxin Yu; Chao Yan; Lu Bai; David J Stillman
Journal:  Genetics       Date:  2020-04-23       Impact factor: 4.562

Review 3.  Topology and control of the cell-cycle-regulated transcriptional circuitry.

Authors:  Steven B Haase; Curt Wittenberg
Journal:  Genetics       Date:  2014-01       Impact factor: 4.562

4.  Protein kinase CK2 holoenzyme promotes start-specific transcription in Saccharomyces cerevisiae.

Authors:  Farida Tripodi; Raffaele Nicastro; Sara Busnelli; Claudia Cirulli; Elisa Maffioli; Gabriella Tedeschi; Lilia Alberghina; Paola Coccetti
Journal:  Eukaryot Cell       Date:  2013-07-19

5.  Spatiotemporal cascade of transcription factor binding required for promoter activation.

Authors:  Robert M Yarrington; Jared S Rudd; David J Stillman
Journal:  Mol Cell Biol       Date:  2014-12-15       Impact factor: 4.272

6.  Multiple Negative Regulators Restrict Recruitment of the SWI/SNF Chromatin Remodeler to the HO Promoter in Saccharomyces cerevisiae.

Authors:  Emily J Parnell; David J Stillman
Journal:  Genetics       Date:  2019-06-05       Impact factor: 4.562

7.  Establishment and Maintenance of Chromatin Architecture Are Promoted Independently of Transcription by the Histone Chaperone FACT and H3-K56 Acetylation in Saccharomyces cerevisiae.

Authors:  Laura L McCullough; Trang H Pham; Timothy J Parnell; Zaily Connell; Mahesh B Chandrasekharan; David J Stillman; Tim Formosa
Journal:  Genetics       Date:  2019-01-24       Impact factor: 4.562

8.  The cell-cycle transcriptional network generates and transmits a pulse of transcription once each cell cycle.

Authors:  Chun-Yi Cho; Christina M Kelliher; Steven B Haase
Journal:  Cell Cycle       Date:  2019-02-05       Impact factor: 4.534

9.  FACT prevents the accumulation of free histones evicted from transcribed chromatin and a subsequent cell cycle delay in G1.

Authors:  Macarena Morillo-Huesca; Douglas Maya; Mari Cruz Muñoz-Centeno; Rakesh Kumar Singh; Vincent Oreal; Gajjalaiahvari Ugander Reddy; Dun Liang; Vincent Géli; Akash Gunjan; Sebastián Chávez
Journal:  PLoS Genet       Date:  2010-05-20       Impact factor: 5.917

10.  DSIF and RNA polymerase II CTD phosphorylation coordinate the recruitment of Rpd3S to actively transcribed genes.

Authors:  Simon Drouin; Louise Laramée; Pierre-Étienne Jacques; Audrey Forest; Maxime Bergeron; François Robert
Journal:  PLoS Genet       Date:  2010-10-28       Impact factor: 5.917

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