Literature DB >> 19743848

Controlling peptide folding with repulsive interactions between phosphorylated amino acids and tryptophan.

Alexander J Riemen1, Marcey L Waters.   

Abstract

Phosphorylated amino acids were incorporated into a designed beta-hairpin peptide to study the effect on beta-hairpin structure when the phosphate group is positioned to interact with a tryptophan residue on the neighboring strand. The three commonly phosphorylated residues in biological systems, serine, threonine, and tyrosine, were studied in the same beta-hairpin system. It was found that phosphorylation destabilizes the hairpin structure by approximately 1.0 kcal/mol, regardless of the type of phosphorylated residue. In contrast, destabilization due to glutamic acid was about 0.3 kcal/mol. Double mutant cycles and pH studies are consistent with a repulsive interaction as the source of destabilization. These findings demonstrate a novel mechanism by which phosphorylation may influence protein structure and function.

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Year:  2009        PMID: 19743848      PMCID: PMC2757742          DOI: 10.1021/ja9047575

Source DB:  PubMed          Journal:  J Am Chem Soc        ISSN: 0002-7863            Impact factor:   15.419


  29 in total

1.  Interplay between hydrophobic cluster and loop propensity in beta-hairpin formation.

Authors:  J F Espinosa; V Muñoz; S H Gellman
Journal:  J Mol Biol       Date:  2001-02-23       Impact factor: 5.469

Review 2.  Structural basis for control by phosphorylation.

Authors:  L N Johnson; R J Lewis
Journal:  Chem Rev       Date:  2001-08       Impact factor: 60.622

3.  Effect of phosphorylation on alpha-helix stability as a function of position.

Authors:  Charles D Andrew; Jim Warwicker; Gareth R Jones; Andrew J Doig
Journal:  Biochemistry       Date:  2002-02-12       Impact factor: 3.162

4.  The role of protein phosphorylation in human health and disease. The Sir Hans Krebs Medal Lecture.

Authors:  P Cohen
Journal:  Eur J Biochem       Date:  2001-10

5.  The geometry and efficacy of cation-pi interactions in a diagonal position of a designed beta-hairpin.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  Protein Sci       Date:  2003-11       Impact factor: 6.725

6.  De novo design of a molecular switch: phosphorylation-dependent association of designed peptides.

Authors:  Rachel S Signarvic; William F DeGrado
Journal:  J Mol Biol       Date:  2003-11-14       Impact factor: 5.469

7.  Structure determination and conformational change induced by tyrosine phosphorylation of the N-terminal domain of the alpha-chain of pig gastric H+/K+-ATPase.

Authors:  Naoki Fujitani; Motoi Kanagawa; Tomoyasu Aizawa; Tadayasu Ohkubo; Shunji Kaya; Makoto Demura; Keiichi Kawano; Shin-ichiro Nishimura; Kazuya Taniguchi; Katsutoshi Nitta
Journal:  Biochem Biophys Res Commun       Date:  2003-01-03       Impact factor: 3.575

8.  Interstrand side chain--side chain interactions in a designed beta-hairpin: significance of both lateral and diagonal pairings.

Authors:  F A Syud; H E Stanger; S H Gellman
Journal:  J Am Chem Soc       Date:  2001-09-12       Impact factor: 15.419

9.  Tryptophan zippers: stable, monomeric beta -hairpins.

Authors:  A G Cochran; N J Skelton; M A Starovasnik
Journal:  Proc Natl Acad Sci U S A       Date:  2001-05-01       Impact factor: 11.205

10.  Nascent helix in the multiphosphorylated peptide alphaS2-casein(2-20).

Authors:  N Laila Huq; Keith J Cross; Eric C Reynolds
Journal:  J Pept Sci       Date:  2003-06       Impact factor: 1.905

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  11 in total

1.  Parallel β-sheet secondary structure is stabilized and terminated by interstrand disulfide cross-linking.

Authors:  Aaron M Almeida; Rebecca Li; Samuel H Gellman
Journal:  J Am Chem Soc       Date:  2011-12-13       Impact factor: 15.419

2.  Molecular dynamics of β-hairpin models of epigenetic recognition motifs.

Authors:  Xiange Zheng; Chuanjie Wu; Jay W Ponder; Garland R Marshall
Journal:  J Am Chem Soc       Date:  2012-09-17       Impact factor: 15.419

3.  Structural role of RKS motifs in chromatin interactions: a molecular dynamics study of HP1 bound to a variably modified histone tail.

Authors:  George V Papamokos; George Tziatzos; Dimitrios G Papageorgiou; Spyros D Georgatos; Anastasia S Politou; Efthimios Kaxiras
Journal:  Biophys J       Date:  2012-04-18       Impact factor: 4.033

4.  Structural impact of thioamide incorporation into a β-hairpin.

Authors:  Kristen E Fiore; Martijn J Patist; Sam Giannakoulias; Cheng-Hsin Huang; Hitesh Verma; Bhavesh Khatri; Richard P Cheng; Jayanta Chatterjee; E James Petersson
Journal:  RSC Chem Biol       Date:  2022-04-05

Review 5.  Towards the computational design of protein post-translational regulation.

Authors:  Marta Strumillo; Pedro Beltrao
Journal:  Bioorg Med Chem       Date:  2015-04-25       Impact factor: 3.641

6.  An order-to-disorder structural switch activates the FoxM1 transcription factor.

Authors:  Aimee H Marceau; Caileen M Brison; Santrupti Nerli; Heather E Arsenault; Andrew C McShan; Eefei Chen; Hsiau-Wei Lee; Jennifer A Benanti; Nikolaos G Sgourakis; Seth M Rubin
Journal:  Elife       Date:  2019-05-28       Impact factor: 8.140

7.  Phosphorylation variation during the cell cycle scales with structural propensities of proteins.

Authors:  Stefka Tyanova; Jürgen Cox; Jesper Olsen; Matthias Mann; Dmitrij Frishman
Journal:  PLoS Comput Biol       Date:  2013-01-10       Impact factor: 4.475

8.  OGlcNAcylation and phosphorylation have similar structural effects in α-helices: post-translational modifications as inducible start and stop signals in α-helices, with greater structural effects on threonine modification.

Authors:  Michael B Elbaum; Neal J Zondlo
Journal:  Biochemistry       Date:  2014-04-03       Impact factor: 3.162

9.  OGlcNAcylation and phosphorylation have opposing structural effects in tau: phosphothreonine induces particular conformational order.

Authors:  Michael A Brister; Anil K Pandey; Agata A Bielska; Neal J Zondlo
Journal:  J Am Chem Soc       Date:  2014-03-04       Impact factor: 15.419

Review 10.  From supramolecular chemistry to the nucleosome: studies in biomolecular recognition.

Authors:  Marcey L Waters
Journal:  Beilstein J Org Chem       Date:  2016-08-17       Impact factor: 2.883

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