Literature DB >> 19740989

Role of RNA structures in genome terminal sequences of the hepatitis C virus for replication and assembly.

Peter Friebe1, Ralf Bartenschlager.   

Abstract

Hepatitis C virus (HCV) is a positive-strand RNA virus replicating its genome via a negative-strand [(-)] intermediate. Little is known about replication signals residing in the 3' end of HCV (-) RNA. Recent studies identified seven stem-loop structures (SL-I', -IIz', -IIy', -IIIa', -IIIb', -IIIcdef', and -IV') in this region. In the present study, we mapped the minimal region required for RNA replication to SL-I' and -IIz', functionally confirmed the SL-IIz' structure, and identified SL-IIIa' to -IV' as auxiliary replication elements. In addition, we show that the 5' nontranslated region of the genome most likely does not contain cis-acting RNA structures required for RNA packaging into infectious virions.

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Year:  2009        PMID： 19740989      PMCID： PMC2772684          DOI： 10.1128/JVI.01508-09

Source DB:  PubMed          Journal:  J Virol        ISSN： 0022-538X            Impact factor:   5.103


  33 in total

1.  Structural requirements for assembly and homotypic interactions of the hepatitis C virus core protein.

Authors:  Meehyein Kim; Youngju Ha; Hae-Joon Park
Journal:  Virus Res       Date:  2006-09-01       Impact factor: 3.303

2.  Modulation of hepatitis C virus RNA abundance by a liver-specific MicroRNA.

Authors:  Catherine L Jopling; Minkyung Yi; Alissa M Lancaster; Stanley M Lemon; Peter Sarnow
Journal:  Science       Date:  2005-09-02       Impact factor: 47.728

3.  Down-regulation of the internal ribosome entry site (IRES)-mediated translation of the hepatitis C virus: critical role of binding of the stem-loop IIId domain of IRES and the viral core protein.

Authors:  Takashi Shimoike; Chika Koyama; Kyoko Murakami; Ryosuke Suzuki; Yoshiharu Matsuura; Tatsuo Miyamura; Tetsuro Suzuki
Journal:  Virology       Date:  2005-11-17       Impact factor: 3.616

Review 4.  Novel insights into hepatitis C virus replication and persistence.

Authors:  Ralf Bartenschlager; Michael Frese; Thomas Pietschmann
Journal:  Adv Virus Res       Date:  2004       Impact factor: 9.937

5.  The level of CD81 cell surface expression is a key determinant for productive entry of hepatitis C virus into host cells.

Authors:  George Koutsoudakis; Eva Herrmann; Stephanie Kallis; Ralf Bartenschlager; Thomas Pietschmann
Journal:  J Virol       Date:  2006-11-01       Impact factor: 5.103

6.  Position-dependent function for a tandem microRNA miR-122-binding site located in the hepatitis C virus RNA genome.

Authors:  Catherine L Jopling; Sylvia Schütz; Peter Sarnow
Journal:  Cell Host Microbe       Date:  2008-07-17       Impact factor: 21.023

7.  Efficient trans-encapsidation of hepatitis C virus RNAs into infectious virus-like particles.

Authors:  Eike Steinmann; Christiane Brohm; Stephanie Kallis; Ralf Bartenschlager; Thomas Pietschmann
Journal:  J Virol       Date:  2008-05-14       Impact factor: 5.103

8.  Kissing-loop interaction in the 3' end of the hepatitis C virus genome essential for RNA replication.

Authors:  Peter Friebe; Julien Boudet; Jean-Pierre Simorre; Ralf Bartenschlager
Journal:  J Virol       Date:  2005-01       Impact factor: 5.103

9.  Two cis-acting elements in negative RNA strand of Hepatitis C virus involved in synthesis of positive RNA strand in vitro.

Authors:  L Ye; K A Timani; L Ye; L Kong; X Yang; Q Liao; J Wu
Journal:  Acta Virol       Date:  2005       Impact factor: 1.162

10.  Identification of determinants involved in initiation of hepatitis C virus RNA synthesis by using intergenotypic replicase chimeras.

Authors:  Marco Binder; Doris Quinkert; Olga Bochkarova; Rahel Klein; Nikolina Kezmic; Ralf Bartenschlager; Volker Lohmann
Journal:  J Virol       Date:  2007-03-07       Impact factor: 5.103
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  32 in total

Review 1.  Hepatitis C virus: assembly and release of virus particles.

Authors:  Daniel M Jones; John McLauchlan
Journal:  J Biol Chem       Date:  2010-05-10       Impact factor: 5.157

2.  A Massively Parallel Selection of Small Molecule-RNA Motif Binding Partners Informs Design of an Antiviral from Sequence.

Authors:  Jessica L Childs-Disney; Tuan Tran; Balayeshwanth R Vummidi; Sai Pradeep Velagapudi; Hafeez S Haniff; Yasumasa Matsumoto; Gogce Crynen; Mark R Southern; Avik Biswas; Zi-Fu Wang; Timothy L Tellinghuisen; Matthew D Disney
Journal:  Chem       Date:  2018-09-13       Impact factor: 22.804

3.  miR-122 and Ago interactions with the HCV genome alter the structure of the viral 5' terminus.

Authors:  Jasmin Chahal; Luca F R Gebert; Hin Hark Gan; Edna Camacho; Kristin C Gunsalus; Ian J MacRae; Selena M Sagan
Journal:  Nucleic Acids Res       Date:  2019-06-04       Impact factor: 16.971

4.  Regulation of hepatitis C virus translation and infectious virus production by the microRNA miR-122.

Authors:  Rohit K Jangra; Minkyung Yi; Stanley M Lemon
Journal:  J Virol       Date:  2010-04-28       Impact factor: 5.103

Review 5.  cis-Acting RNA elements in the hepatitis C virus RNA genome.

Authors:  Selena M Sagan; Jasmin Chahal; Peter Sarnow
Journal:  Virus Res       Date:  2015-01-07       Impact factor: 3.303

6.  Functionally conserved architecture of hepatitis C virus RNA genomes.

Authors:  David M Mauger; Michael Golden; Daisuke Yamane; Sara Williford; Stanley M Lemon; Darren P Martin; Kevin M Weeks
Journal:  Proc Natl Acad Sci U S A       Date:  2015-03-09       Impact factor: 11.205

7.  Sam68 Promotes Hepatitis C Virus Replication by Interaction with Stem-Loop 2 of Viral 5' Untranslated Region.

Authors:  Yuwen Qin; Zhen Xun; Yanxia Guo; Shengwen Chen; Haizhen Zhu
Journal:  J Virol       Date:  2019-06-28       Impact factor: 5.103

8.  Modulation of GB virus B RNA abundance by microRNA-122: dependence on and escape from microRNA-122 restriction.

Authors:  Selena M Sagan; Peter Sarnow; Joyce A Wilson
Journal:  J Virol       Date:  2013-04-24       Impact factor: 5.103

9.  Identification of a structural element of the hepatitis C virus minus strand RNA involved in the initiation of RNA synthesis.

Authors:  Kathleen Mahias; Neveen Ahmed-El-Sayed; Cyril Masante; Juliette Bitard; Cathy Staedel; Fabien Darfeuille; Michel Ventura; Thérèse Astier-Gin
Journal:  Nucleic Acids Res       Date:  2010-03-01       Impact factor: 16.971

Review 10.  The yin and yang of hepatitis C: synthesis and decay of hepatitis C virus RNA.

Authors:  You Li; Daisuke Yamane; Takahiro Masaki; Stanley M Lemon
Journal:  Nat Rev Microbiol       Date:  2015-08-10       Impact factor: 60.633
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