| Literature DB >> 19727401 |
Sebastiaan J van Hal1, Hong Foo, Christopher C Blyth, Kenneth McPhie, Paul Armstrong, Vitali Sintchenko, Dominic E Dwyer.
Abstract
BACKGROUND: Influenza causes annual epidemics and often results in extensive outbreaks in closed communities. To minimize transmission, a range of interventions have been suggested. For these to be effective, an accurate and timely diagnosis of influenza is required. This is confirmed by a positive laboratory test result in an individual whose symptoms are consistent with a predefined clinical case definition. However, the utility of these clinical case definitions and laboratory testing in mass gathering outbreaks remains unknown. METHODS ANDEntities:
Mesh:
Year: 2009 PMID: 19727401 PMCID: PMC2731881 DOI: 10.1371/journal.pone.0006620
Source DB: PubMed Journal: PLoS One ISSN: 1932-6203 Impact factor: 3.240
Figure 1The epidemic curve, as of symptom onset date, from the SOPS clinic.
Presenting pilgrims are represented as influenza test positive or negative and not tested.
Figure 2Seven state Markov diagram.
Each day of an outbreak a hypothetical cohort of pilgrims moves (following the arrows) to another or returns to the same health state based on transition probabilities. Shaded boxes represent terminal (or absorbing) states.
Demographics, ILI symptoms and performance of case definitions and laboratory tests for 242 pilgrims presenting to the Olympic Park Site influenza clinic.
| Number of pilgrims screened | 242 |
| Sex, male | 90 (37%) |
| Age in years, mean (range) | 26 (12–66) |
| Mean duration of symptoms in days (range) | 3 (0–15) |
| Prior influenza vaccination | 24 (10%) |
| Pilgrims undergoing respiratory sampling | 114 (47%) |
| Pilgrims positive for influenza | 45 (19%) |
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| |
| Temperature >38°C | 14 (31%) |
| History of fever | 30 (66%) |
| Cough | 31 (69%) |
| Sore Throat | 31 (69%) |
| Coryza | 32 (71%) |
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| |
| NSW: Presence of a temperature >38°C, a cough and one other ILIsymptom | 12 (26%) |
| CDC: Presence of temperature >37.8°C, a cough or sore throat | 18 (40%) |
| Outbreak Case definition (history of fever and cough) | 30 (66%) |
| Presence of coryza with or without any other symptom | 32 (71%) |
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| |
| PCR | 42 (93%)1 |
| Indirect Fluorescent Antibody | 33 (74%)1 |
| On-site Point-of-Care | 26 (56%)1 |
Case definition outbreak values were subsequently used in the Markov model and are similar to previous published case definition ranges of between 44 and 87% [28], [29], [30], [31], [32].
The “gold standard” was defined as isolation of influenza virus by culture and/or detection of virus by PCR
1The calculated laboratory testing values were subsequently used in the Markov model and are similar to published PCR, IFA and POCT sensitivities of 90 to 100% [13], [33], [34], [35]; 60 to 100% [12], [36], [37] and 50 to 95% [38], [39], [40] respectively.
Baseline probability values and ranges (%) of variables used to construct the Markov model.
| Adopted Influenza characteristics | Model value | Published ranges and references |
| Influenza incubation period | 48 hrs | 24–96 hrs |
| Infectious period | 96 hrs | 24–144 hrs |
| Probability of a symptomatic infection | 0.67 | 0.67 |
| Probability of an asymptomatic infection | 0.33 | 0.33 |
| An asymptomatic infection is half as infectious as a symptomatic infection | 1/2 |
1/2
|
| Number of secondary influenza cases from an index case (Ro) | 4.0 | 1.2–20 |
| Exposure probability | 0.001–1.0 | <0.001–1.0 |
The sensitivity of the case definition or laboratory test is based on the observed influenza outbreak compared to the “gold standard” (see text for details) and corresponds with value used in the Model simulations.
The number of exposed pilgrims on a particular day divided by the total susceptible population. In turn, the susceptible population is the total population excluding all pilgrims previously infected (and so regarded as immune) and those currently infected with influenza.
Figure 3Determination of the model Ro from the SOPS epidemic curve.
The number of observed and likely daily influenza cases (based on a pilgrims reported symptom onset date) at the SOPS clinic compared to the number of daily cases when decisions are made on the combination of the SOPS Outbreak case definition and a POCT result and using different Ro values. The likely epidemic curve represents the observed cases and the additional cases that would have resulted if all individuals presenting were tested. The Ro values are modeled on a closed population of 242 (the number of pilgrims presenting to the SOPS clinic) and 6000 (the minimum number of pilgrims accommodated at the SOPS).
Figure 4The impact of case definition sensitivities and a laboratory test on the number of influenza cases averted.
The proportion of influenza cases averted at 17 days compared to no intervention, when isolation of influenza cases is based on increasing case definition sensitivities alone or in combination with a laboratory test.
Figure 5The impact of PCR TAT on the number of influenza cases averted.
The percentage of influenza cases averted at day 17 based on PCR TAT in combination with either the presence of coryza or the CDC case definition compared to no intervention. The dotted lines represent the percentage of cases averted for the combination of the presence of coryza or the CDC case definition and a POCT. (With isolation of patients only after the receipt of a positive PCR result).
Figure 6The value of different laboratory tests in extending an influenza outbreak.
The number of additional days the outbreak is extended using a combination of a laboratory test and case definition compared to no intervention. IFA and PCR with a TAT of 24 hours were equivalent to the PCR with a 12 hour TAT and the POCT respectively.
Figure 7The role of laboratory testing in detecting true influenza cases.
The percentage of influenza cases identified at day 17 based on the combination of a case definition and laboratory test compared to no intervention.