Literature DB >> 19721885

Playing inside the genes: Intragenic histone acetylation after membrane depolarization of neural cells opens a path for alternative splicing regulation.

Ignacio E Schor1, Alberto R Kornblihtt.   

Abstract

Regulation of alternative splicing is coupled to transcription quality, the polymerase elongation rate being an important factor in modulating splicing choices. In a recently published work, we provide evidence that intragenic histone acetylation patterns can be affected by neural cell excitation in order to regulate alternative splicing of the neural cell adhesion molecule (NCAM) mRNA. This example illustrates how an extracellular stimulus can influence transcription-coupled alternative splicing, strengthening the link between chromatin structure, transcriptional elongation and mRNA processing.

Entities:  

Keywords:  NCAM; alternative splicing; chromatin; histone acetylation; neuronal excitation; structure; transcriptional elongation

Year:  2009        PMID: 19721885      PMCID: PMC2734042          DOI: 10.4161/cib.2.4.8550

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  30 in total

Review 1.  Alternative pre-mRNA splicing: the logic of combinatorial control.

Authors:  C W Smith; J Valcárcel
Journal:  Trends Biochem Sci       Date:  2000-08       Impact factor: 13.807

Review 2.  Alternative pre-mRNA splicing and proteome expansion in metazoans.

Authors:  Tom Maniatis; Bosiljka Tasic
Journal:  Nature       Date:  2002-07-11       Impact factor: 49.962

Review 3.  Influence of RNA secondary structure on the pre-mRNA splicing process.

Authors:  Emanuele Buratti; Francisco E Baralle
Journal:  Mol Cell Biol       Date:  2004-12       Impact factor: 4.272

4.  Nova regulates brain-specific splicing to shape the synapse.

Authors:  Jernej Ule; Aljaz Ule; Joanna Spencer; Alan Williams; Jing-Shan Hu; Melissa Cline; Hui Wang; Tyson Clark; Claire Fraser; Matteo Ruggiu; Barry R Zeeberg; David Kane; John N Weinstein; John Blume; Robert B Darnell
Journal:  Nat Genet       Date:  2005-07-24       Impact factor: 38.330

5.  Chromatin, transcript elongation and alternative splicing.

Authors:  Alberto R Kornblihtt
Journal:  Nat Struct Mol Biol       Date:  2006-01       Impact factor: 15.369

6.  Recognition of trimethylated histone H3 lysine 4 facilitates the recruitment of transcription postinitiation factors and pre-mRNA splicing.

Authors:  Robert J Sims; Scott Millhouse; Chi-Fu Chen; Brian A Lewis; Hediye Erdjument-Bromage; Paul Tempst; James L Manley; Danny Reinberg
Journal:  Mol Cell       Date:  2007-11-30       Impact factor: 17.970

Review 7.  Splicing regulation in neurologic disease.

Authors:  Donny D Licatalosi; Robert B Darnell
Journal:  Neuron       Date:  2006-10-05       Impact factor: 17.173

8.  CBP histone acetyltransferase activity is a critical component of memory consolidation.

Authors:  Edward Korzus; Michael G Rosenfeld; Mark Mayford
Journal:  Neuron       Date:  2004-06-24       Impact factor: 17.173

9.  Chromatin acetylation, memory, and LTP are impaired in CBP+/- mice: a model for the cognitive deficit in Rubinstein-Taybi syndrome and its amelioration.

Authors:  Juan M Alarcón; Gaël Malleret; Khalid Touzani; Svetlana Vronskaya; Shunsuke Ishii; Eric R Kandel; Angel Barco
Journal:  Neuron       Date:  2004-06-24       Impact factor: 17.173

10.  A combinatorial code for splicing silencing: UAGG and GGGG motifs.

Authors:  Kyoungha Han; Gene Yeo; Ping An; Christopher B Burge; Paula J Grabowski
Journal:  PLoS Biol       Date:  2005-04-19       Impact factor: 8.029

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  4 in total

Review 1.  Codes and circuits.

Authors:  Phillip G Nelson
Journal:  Cell Mol Neurobiol       Date:  2011-03-29       Impact factor: 5.046

2.  HDAC inhibitor-dependent transcriptome and memory reinstatement in cognitive decline models.

Authors:  Eva Benito; Hendrik Urbanke; Binu Ramachandran; Jonas Barth; Rashi Halder; Ankit Awasthi; Gaurav Jain; Vincenzo Capece; Susanne Burkhardt; Magdalena Navarro-Sala; Sankari Nagarajan; Anna-Lena Schütz; Steven A Johnsen; Stefan Bonn; Reinhardt Lührmann; Camin Dean; André Fischer
Journal:  J Clin Invest       Date:  2015-08-17       Impact factor: 14.808

3.  Alternative splicing links histone modifications to stem cell fate decision.

Authors:  Yungang Xu; Weiling Zhao; Scott D Olson; Karthik S Prabhakara; Xiaobo Zhou
Journal:  Genome Biol       Date:  2018-09-14       Impact factor: 13.583

4.  Promoter-like epigenetic signatures in exons displaying cell type-specific splicing.

Authors:  Joao Curado; Camilla Iannone; Hagen Tilgner; Juan Valcárcel; Roderic Guigó
Journal:  Genome Biol       Date:  2015-10-23       Impact factor: 13.583

  4 in total

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