Literature DB >> 19720034

On the stability of the soluble amyloid aggregates.

Bankanidhi Sahoo1, Suman Nag, Parijat Sengupta, Sudipta Maiti.   

Abstract

Many amyloid proteins form metastable soluble aggregates (or protofibrils, or protein nanoparticles, with characteristic sizes from approximately 10 to a few hundred nm). These can coexist with protein monomers and amyloid precipitates. These soluble aggregates are key determinants of the toxicity of these proteins. It is therefore imperative to understand the physical basis underlying their stability. Simple nucleation theory, typically applied to explain the kinetics of amyloid precipitation, fails to predict such intermediate stable states. We examine stable nanoparticles formed by the Alzheimer's amyloid-beta peptide (40 and 42 residues), and by the protein barstar. These molecules have different hydrophobicities, and therefore have different short-range attractive interactions between the molecules. We also vary the pH and the ionic strength of the solution to tune the long-range electrostatic repulsion between them. In all the cases, we find that increased long-range repulsion results in smaller stable nanoparticles, whereas increased hydrophobicity produces the opposite result. Our results agree with a charged-colloid type of model for these particles, which asserts that growth-arrested colloid particles can result from a competition between short-range attraction and long-range repulsion. The nanoparticle size varies superlinearly with the ionic strength, possibly indicating a transition from an isotropic to a linear mode of growth. Our results provide a framework for understanding the stability and growth of toxic amyloid nanoparticles, and provide cues for designing effective destabilizing agents.

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Year:  2009        PMID: 19720034      PMCID: PMC2749744          DOI: 10.1016/j.bpj.2009.05.055

Source DB:  PubMed          Journal:  Biophys J        ISSN: 0006-3495            Impact factor:   4.033


  42 in total

1.  Amyloid beta-protein fibrillogenesis. Structure and biological activity of protofibrillar intermediates.

Authors:  D M Walsh; D M Hartley; Y Kusumoto; Y Fezoui; M M Condron; A Lomakin; G B Benedek; D J Selkoe; D B Teplow
Journal:  J Biol Chem       Date:  1999-09-03       Impact factor: 5.157

2.  Cause of neural death in neurodegenerative diseases attributable to expansion of glutamine repeats.

Authors:  M F Perutz; A H Windle
Journal:  Nature       Date:  2001-07-12       Impact factor: 49.962

3.  Equilibrium cluster formation in concentrated protein solutions and colloids.

Authors:  Anna Stradner; Helen Sedgwick; Frédéric Cardinaux; Wilson C K Poon; Stefan U Egelhaaf; Peter Schurtenberger
Journal:  Nature       Date:  2004-11-25       Impact factor: 49.962

4.  The aggregation kinetics of Alzheimer's beta-amyloid peptide is controlled by stochastic nucleation.

Authors:  Peter Hortschansky; Volker Schroeckh; Tony Christopeit; Giorgia Zandomeneghi; Marcus Fändrich
Journal:  Protein Sci       Date:  2005-06-03       Impact factor: 6.725

5.  Characterization of the formation of amyloid protofibrils from barstar by mapping residue-specific fluorescence dynamics.

Authors:  Samrat Mukhopadhyay; Pabitra K Nayak; Jayant B Udgaonkar; G Krishnamoorthy
Journal:  J Mol Biol       Date:  2006-02-20       Impact factor: 5.469

6.  Quasihomogeneous nucleation of amyloid beta yields numerical bounds for the critical radius, the surface tension, and the free energy barrier for nucleus formation.

Authors:  K Garai; B Sahoo; P Sengupta; S Maiti
Journal:  J Chem Phys       Date:  2008-01-28       Impact factor: 3.488

7.  Fluorescence correlation spectroscopy. II. An experimental realization.

Authors:  D Magde; E L Elson; W W Webb
Journal:  Biopolymers       Date:  1974-01       Impact factor: 2.505

8.  Amyloid beta-protein fibrillogenesis. Detection of a protofibrillar intermediate.

Authors:  D M Walsh; A Lomakin; G B Benedek; M M Condron; D B Teplow
Journal:  J Biol Chem       Date:  1997-08-29       Impact factor: 5.157

9.  Modulating amyloid self-assembly and fibril morphology with Zn(II).

Authors:  Jijun Dong; Jacob E Shokes; Robert A Scott; David G Lynn
Journal:  J Am Chem Soc       Date:  2006-03-22       Impact factor: 15.419

10.  NMR identification and characterization of the flexible regions in the 160 kDa molten globule-like aggregate of barstar at low pH.

Authors:  Juhi Juneja; Neel S Bhavesh; Jayant B Udgaonkar; Ramakrishna V Hosur
Journal:  Biochemistry       Date:  2002-08-06       Impact factor: 3.162

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  10 in total

Review 1.  Biochemistry of amyloid β-protein and amyloid deposits in Alzheimer disease.

Authors:  Colin L Masters; Dennis J Selkoe
Journal:  Cold Spring Harb Perspect Med       Date:  2012-06       Impact factor: 6.915

2.  Measurement of the attachment and assembly of small amyloid-β oligomers on live cell membranes at physiological concentrations using single-molecule tools.

Authors:  Suman Nag; Jiji Chen; J Irudayaraj; S Maiti
Journal:  Biophys J       Date:  2010-09-22       Impact factor: 4.033

3.  Molecular dynamics simulation studies of the structural response of an isolated Aβ1-42 monomer localized in the vicinity of the hydrophilic TiO 2 surface.

Authors:  Jaya C Jose; Neelanjana Sengupta
Journal:  Eur Biophys J       Date:  2013-04-12       Impact factor: 1.733

4.  Nature of the amyloid-beta monomer and the monomer-oligomer equilibrium.

Authors:  Suman Nag; Bidyut Sarkar; Arkarup Bandyopadhyay; Bankanidhi Sahoo; Varun K A Sreenivasan; Mamata Kombrabail; Chandrakesan Muralidharan; Sudipta Maiti
Journal:  J Biol Chem       Date:  2011-02-24       Impact factor: 5.157

5.  Correction of Systematic Bias in Single Molecule Photobleaching Measurements.

Authors:  Simli Dey; Anirban Das; Sudipta Maiti
Journal:  Biophys J       Date:  2020-01-11       Impact factor: 4.033

6.  Stability of Aβ (1-42) peptide fibrils as consequence of environmental modifications.

Authors:  Maria Gregori; Valeria Cassina; Doriano Brogioli; Domenico Salerno; Line De Kimpe; Wiep Scheper; Massimo Masserini; Francesco Mantegazza
Journal:  Eur Biophys J       Date:  2010-08-09       Impact factor: 1.733

7.  Determining the Stoichiometry of Amyloid Oligomers by Single-Molecule Photobleaching.

Authors:  Arpan Dey; Sudipta Maiti
Journal:  Methods Mol Biol       Date:  2022

8.  Single-molecule photobleaching: Instrumentation and applications.

Authors:  Simli Dey; Sudipta Maiti
Journal:  J Biosci       Date:  2018-07       Impact factor: 1.826

9.  How Fluorescent Tags Modify Oligomer Size Distributions of the Alzheimer Peptide.

Authors:  Jana Wägele; Silvia De Sio; Bruno Voigt; Jochen Balbach; Maria Ott
Journal:  Biophys J       Date:  2018-12-19       Impact factor: 4.033

10.  Ammonium hydroxide treatment of Aβ produces an aggregate free solution suitable for biophysical and cell culture characterization.

Authors:  Timothy M Ryan; Joanne Caine; Haydyn D T Mertens; Nigel Kirby; Julie Nigro; Kerry Breheney; Lynne J Waddington; Victor A Streltsov; Cyril Curtain; Colin L Masters; Blaine R Roberts
Journal:  PeerJ       Date:  2013-05-07       Impact factor: 2.984

  10 in total

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