Literature DB >> 19704906

Horizontal SPINning of transposons.

Clément Gilbert1, John K Pace, Cédric Feschotte.   

Abstract

The term 'horizontal transfer (HT)' refers to the transfer of genetic material between two reproductively isolated organisms. HT is thought to occur rarely in eukaryotes compared to vertical inheritance, the transmission of DNA from parent to offspring. In a recent study we have provided evidence that a family of DNA transposons, called SPACE INVADERS or SPIN, independently invaded horizontally the genome of seven distantly related tetrapod species and subsequently amplified to high copy number in each of them. This discovery calls for further investigations to better characterize the extent to which genomes have been shaped through HT events. In this addendum, we briefly discuss some general issues regarding the study of HT and further speculate on the sequence of events that could explain the current taxonomic distribution of SPIN. We propose that the presence of SPIN in the opossum (Monodelphis domestica), a taxon endemic to South America, reflects a transoceanic HT event that occurred from Old to New World, between 46 and 15 million years ago.

Entities:  

Keywords:  evolution; genome; horizontal transfer; mobile genetic elements; tetrapods; transposable elements

Year:  2009        PMID: 19704906      PMCID: PMC2686361          DOI: 10.4161/cib.7720

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  23 in total

Review 1.  Lateral gene transfer and the nature of bacterial innovation.

Authors:  H Ochman; J G Lawrence; E A Groisman
Journal:  Nature       Date:  2000-05-18       Impact factor: 49.962

2.  The first steps of transposable elements invasion: parasitic strategy vs. genetic drift.

Authors:  Arnaud Le Rouzic; Pierre Capy
Journal:  Genetics       Date:  2005-02       Impact factor: 4.562

3.  Massive horizontal gene transfer in bdelloid rotifers.

Authors:  Eugene A Gladyshev; Matthew Meselson; Irina R Arkhipova
Journal:  Science       Date:  2008-05-30       Impact factor: 47.728

4.  The genome of the protist parasite Entamoeba histolytica.

Authors:  Brendan Loftus; Iain Anderson; Rob Davies; U Cecilia M Alsmark; John Samuelson; Paolo Amedeo; Paola Roncaglia; Matt Berriman; Robert P Hirt; Barbara J Mann; Tomo Nozaki; Bernard Suh; Mihai Pop; Michael Duchene; John Ackers; Egbert Tannich; Matthias Leippe; Margit Hofer; Iris Bruchhaus; Ute Willhoeft; Alok Bhattacharya; Tracey Chillingworth; Carol Churcher; Zahra Hance; Barbara Harris; David Harris; Kay Jagels; Sharon Moule; Karen Mungall; Doug Ormond; Rob Squares; Sally Whitehead; Michael A Quail; Ester Rabbinowitsch; Halina Norbertczak; Claire Price; Zheng Wang; Nancy Guillén; Carol Gilchrist; Suzanne E Stroup; Sudha Bhattacharya; Anuradha Lohia; Peter G Foster; Thomas Sicheritz-Ponten; Christian Weber; Upinder Singh; Chandrama Mukherjee; Najib M El-Sayed; William A Petri; C Graham Clark; T Martin Embley; Bart Barrell; Claire M Fraser; Neil Hall
Journal:  Nature       Date:  2005-02-24       Impact factor: 49.962

5.  Horizontal SINE transfer between vertebrate classes.

Authors:  D Kordis; F Gubensek
Journal:  Nat Genet       Date:  1995-06       Impact factor: 38.330

6.  Widespread lateral gene transfer from intracellular bacteria to multicellular eukaryotes.

Authors:  Julie C Dunning Hotopp; Michael E Clark; Deodoro C S G Oliveira; Jeremy M Foster; Peter Fischer; Mónica C Muñoz Torres; Jonathan D Giebel; Nikhil Kumar; Nadeeza Ishmael; Shiliang Wang; Jessica Ingram; Rahul V Nene; Jessica Shepard; Jeffrey Tomkins; Stephen Richards; David J Spiro; Elodie Ghedin; Barton E Slatko; Hervé Tettelin; John H Werren
Journal:  Science       Date:  2007-08-30       Impact factor: 47.728

7.  A mitochondrial DNA phylogeny of African clawed frogs: phylogeography and implications for polyploid evolution.

Authors:  Ben J Evans; Darcy B Kelley; Richard C Tinsley; Don J Melnick; David C Cannatella
Journal:  Mol Phylogenet Evol       Date:  2004-10       Impact factor: 4.286

8.  Phylogeny and divergence-date estimates of rapid radiations in muroid rodents based on multiple nuclear genes.

Authors:  Scott Steppan; Ronald Adkins; Joel Anderson
Journal:  Syst Biol       Date:  2004-08       Impact factor: 15.683

Review 9.  Factors that affect the horizontal transfer of transposable elements.

Authors:  Joana C Silva; Elgion L Loreto; Jonathan B Clark
Journal:  Curr Issues Mol Biol       Date:  2004-01       Impact factor: 2.081

10.  Identification of multiple independent horizontal gene transfers into poxviruses using a comparative genomics approach.

Authors:  Kirsten A Bratke; Aoife McLysaght
Journal:  BMC Evol Biol       Date:  2008-02-27       Impact factor: 3.260

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  11 in total

1.  Rampant horizontal transfer of SPIN transposons in squamate reptiles.

Authors:  Clément Gilbert; Sharon S Hernandez; Jaime Flores-Benabib; Eric N Smith; Cédric Feschotte
Journal:  Mol Biol Evol       Date:  2011-07-18       Impact factor: 16.240

2.  Methods for detection of horizontal transfer of transposable elements in complete genomes.

Authors:  Marcos Oliveira de Carvalho; Elgion L S Loreto
Journal:  Genet Mol Biol       Date:  2012-12-18       Impact factor: 1.771

3.  How does selfing affect the dynamics of selfish transposable elements?

Authors:  Thibaud S Boutin; Arnaud Le Rouzic; Pierre Capy
Journal:  Mob DNA       Date:  2012-03-07

Review 4.  Diamonds and rust: how transposable elements influence mammalian genomes. Conference on Mobile Elements in Mammalian Genomes.

Authors:  John V Moran; Harmit S Malik
Journal:  EMBO Rep       Date:  2009-11-13       Impact factor: 8.807

Review 5.  Gene Transfer Potential of Outer Membrane Vesicles of Gram-Negative Bacteria.

Authors:  Federica Dell'Annunziata; Veronica Folliero; Rosa Giugliano; Anna De Filippis; Cristina Santarcangelo; Viviana Izzo; Maria Daglia; Massimiliano Galdiero; Carla Renata Arciola; Gianluigi Franci
Journal:  Int J Mol Sci       Date:  2021-06-01       Impact factor: 5.923

6.  On the transposon origins of mammalian SCAND3 and KRBA2, two zinc-finger genes carrying an integrase/transposase domain.

Authors:  Carlos Llorens; Guillermo P Bernet; Sukanya Ramasamy; Cedric Feschotte; Andrés Moya
Journal:  Mob Genet Elements       Date:  2012-09-01

7.  Novel poxvirus in big brown bats, northwestern United States.

Authors:  Ginny L Emerson; Robert Nordhausen; Michael M Garner; John R Huckabee; Steven Johnson; Ron D Wohrle; Whitni B Davidson; Kimberly Wilkins; Yu Li; Jeffrey B Doty; Nadia F Gallardo-Romero; Maureen G Metcalfe; Kevin L Karem; Inger K Damon; Darin S Carroll
Journal:  Emerg Infect Dis       Date:  2013-06       Impact factor: 6.883

8.  Chromosomal organization and evolutionary history of Mariner transposable elements in Scarabaeinae coleopterans.

Authors:  Sarah G Oliveira; Diogo C Cabral-de-Mello; Rita C Moura; Cesar Martins
Journal:  Mol Cytogenet       Date:  2013-11-29       Impact factor: 2.009

9.  A new genome-wide method to track horizontally transferred sequences: application to Drosophila.

Authors:  Laurent Modolo; Franck Picard; Emmanuelle Lerat
Journal:  Genome Biol Evol       Date:  2014-02       Impact factor: 3.416

10.  Evidence of horizontal transfer of non-autonomous Lep1 Helitrons facilitated by host-parasite interactions.

Authors:  Xuezhu Guo; Jingkun Gao; Fei Li; Jianjun Wang
Journal:  Sci Rep       Date:  2014-05-30       Impact factor: 4.379

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