Literature DB >> 19704853

The functional relationships underlying a synthetic genetic network.

Sue A Krause1, Joseph V Gray.   

Abstract

Here, we focus on synthetic lethal genetic interactions, examples of genetic enhancements, where mutations in two different genes result in lethality but only when present together. We recently identified the synthetic lethal network around the PKC1 gene encoding the essential protein kinase C of yeast. We found that this network is heavily enriched for interactions with genes whose products are closely linked to Pkc1 signaling in vivo. Here, we show that: the PKC1 gene elicits a distinct spectrum of genetic interactions to SLT2, encoding a non-essential component of the very same signaling pathway. We also show that the terminal phenotype underlying the synthetic lethal network around PKC1 is not uniform. Synthetic lethal genetic networks thus appear to be very heterogeneous in nature with important implications for what functional relationships can be discovered from them.

Entities:  

Keywords:  functional genomics; genetic network; protein kinase C; synthetic lethality

Year:  2009        PMID: 19704853      PMCID: PMC2649287          DOI: 10.4161/cib.2.1.7298

Source DB:  PubMed          Journal:  Commun Integr Biol        ISSN: 1942-0889


  14 in total

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Journal:  Science       Date:  2004-02-06       Impact factor: 47.728

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Journal:  Trends Genet       Date:  2005-11-23       Impact factor: 11.639

5.  Systematic genetic analysis with ordered arrays of yeast deletion mutants.

Authors:  A H Tong; M Evangelista; A B Parsons; H Xu; G D Bader; N Pagé; M Robinson; S Raghibizadeh; C W Hogue; H Bussey; B Andrews; M Tyers; C Boone
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6.  A robust toolkit for functional profiling of the yeast genome.

Authors:  Xuewen Pan; Daniel S Yuan; Dong Xiang; Xiaoling Wang; Sharon Sookhai-Mahadeo; Joel S Bader; Philip Hieter; Forrest Spencer; Jef D Boeke
Journal:  Mol Cell       Date:  2004-11-05       Impact factor: 17.970

Review 7.  Cell wall integrity signaling in Saccharomyces cerevisiae.

Authors:  David E Levin
Journal:  Microbiol Mol Biol Rev       Date:  2005-06       Impact factor: 11.056

8.  The protein kinase C pathway is required for viability in quiescence in Saccharomyces cerevisiae.

Authors:  Sue Ann Krause; Joseph V Gray
Journal:  Curr Biol       Date:  2002-04-02       Impact factor: 10.834

9.  The synthetic genetic network around PKC1 identifies novel modulators and components of protein kinase C signaling in Saccharomyces cerevisiae.

Authors:  Sue A Krause; Hong Xu; Joseph V Gray
Journal:  Eukaryot Cell       Date:  2008-09-19

10.  Comprehensive curation and analysis of global interaction networks in Saccharomyces cerevisiae.

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Journal:  J Biol       Date:  2006-06-08
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