Literature DB >> 1969619

Large restriction fragments containing poly-TG are highly polymorphic in a variety of vertebrates.

Y Kashi1, Y Tikochinsky, E Genislav, F Iraqi, A Nave, J S Beckmann, Y Gruenbaum, M Soller.   

Abstract

Southern blots of genomic DNA from a variety of species digested by restriction endonucleases having a four-bp specificity, were probed with a bovine genomic clone consisting of seven tandem poly-TG stretches separated by a 29bp linker sequence. Highly variable DNA 'fingerprint' patterns were obtained in chicken, sheep, and horse, moderately variable DNA 'fingerprints' in mouse and man, and a monomorphic pattern in Drosophila. In chicken, horse and man a (TG)10 synthetic oligonucleotide probe gave results identical to those given by the bovine probe. Furthermore, in chicken the DNA fingerprint variation showed typical Mendelian inheritance and differed from the fingerprints obtained with Jeffreys 33.6 and M13 minisatellite probes. Thus, for a variety of vertebrate species, poly-TG-containing probes can uncover useful genetic variation.

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Year:  1990        PMID： 1969619      PMCID： PMC330425          DOI： 10.1093/nar/18.5.1129

Source DB:  PubMed          Journal:  Nucleic Acids Res        ISSN： 0305-1048            Impact factor:   16.971


  17 in total

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Authors:  E M Southern
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Review 2.  The multiple codes of nucleotide sequences.

Authors:  E N Trifonov
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3.  The rate of polygenic mutation.

Authors:  M Lynch
Journal:  Genet Res       Date:  1988-04       Impact factor: 1.588

4.  Abundant class of human DNA polymorphisms which can be typed using the polymerase chain reaction.

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5.  Rates of change in quantitative traits from fixation of new mutations.

Authors:  W G Hill
Journal:  Proc Natl Acad Sci U S A       Date:  1982-01       Impact factor: 11.205

6.  Digoxigenated oligonucleotide probes specific for simple repeats in DNA fingerprinting and hybridization in situ.

Authors:  H Zischler; I Nanda; R Schäfer; M Schmid; J T Epplen
Journal:  Hum Genet       Date:  1989-06       Impact factor: 4.132

7.  A hypervariable microsatellite revealed by in vitro amplification of a dinucleotide repeat within the cardiac muscle actin gene.

Authors:  M Litt; J A Luty
Journal:  Am J Hum Genet       Date:  1989-03       Impact factor: 11.025

8.  Locations and contexts of sequences that hybridize to poly(dG-dT).(dC-dA) in mammalian ribosomal DNAs and two X-linked genes.

Authors:  D C Braaten; J R Thomas; R D Little; K R Dickson; I Goldberg; D Schlessinger; A Ciccodicola; M D'Urso
Journal:  Nucleic Acids Res       Date:  1988-02-11       Impact factor: 16.971

9.  Restriction fragment length polymorphisms in dairy and beef cattle at the growth hormone and prolactin loci.

Authors:  E M Hallerman; A Nave; Y Kashi; Z Holzer; M Soller; J S Beckmann
Journal:  Anim Genet       Date:  1987       Impact factor: 3.169

Review 10.  Topology and formation of triple-stranded H-DNA.

Authors:  H Htun; J E Dahlberg
Journal:  Science       Date:  1989-03-24       Impact factor: 47.728
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  8 in total

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2.  DNA fingerprinting in rice using oligonucleotide probes specific for simple repetitive DNA sequences.

Authors:  W Ramakishana; M D Lagu; V S Gupta; P K Ranjekar
Journal:  Theor Appl Genet       Date:  1994-06       Impact factor: 5.699

3.  Phylogenetic assessment of length variation at a microsatellite locus.

Authors:  G Ortí; D E Pearse; J C Avise
Journal:  Proc Natl Acad Sci U S A       Date:  1997-09-30       Impact factor: 11.205

4.  Instability of simple sequence DNA in Saccharomyces cerevisiae.

Authors:  S T Henderson; T D Petes
Journal:  Mol Cell Biol       Date:  1992-06       Impact factor: 4.272

5.  How is it that microsatellites and random oligonucleotides uncover DNA fingerprint patterns?

Authors:  Y Kashi; A Nave; A Darvasi; Y Gruenbaum; M Soller; J S Beckmann
Journal:  Mamm Genome       Date:  1994-09       Impact factor: 2.957

6.  Microsatellite variation in North American populations of Drosophila melanogaster.

Authors:  D B Goldstein; A G Clark
Journal:  Nucleic Acids Res       Date:  1995-10-11       Impact factor: 16.971

7.  Saccharomyces cerevisiae RAD5-encoded DNA repair protein contains DNA helicase and zinc-binding sequence motifs and affects the stability of simple repetitive sequences in the genome.

Authors:  R E Johnson; S T Henderson; T D Petes; S Prakash; M Bankmann; L Prakash
Journal:  Mol Cell Biol       Date:  1992-09       Impact factor: 4.272

8.  DNA fingerprinting detects genetic variability in the pearl millet downy mildew pathogen (Sclerospora graminicola).

Authors:  J G Sastry; W Ramakrishna; S Sivaramakrishnan; R P Thakur; V S Gupta; P K Ranjekar
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  8 in total

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