Literature DB >> 19693692

Genetic diversity and molecular differentiation of Chinese toad based on microsatellite markers.

Xiao-Bing Wu1, Yu-Ling Hu.   

Abstract

Genetic diversity and population structure of 9 populations of Bufo gargarizans with total 111 samples in China were assessed using seven microsatellite loci. The analysed microsatellite markers produced 161 alleles, varied from 9 to 38 alleles each locus. The number of alleles per population per locus ranged from 4.43 to 10.29. Polymorphic information content showed that all seven loci were highly informative (mean = 0.810 + or - 0.071). The average observed heterozygosity was less than the expected (0.353 + or - 0.051 and 0.828 + or - 0.067, respectively). All tested populations gave significant departures from Hardy-Weinberg equilibrium. Genetic differentiation among the populations was considerably high with the overall and pairwise F (ST) values (mean = 0.160 + or - 0.039), and showed fairly high level of inbreeding (indicated by a mean F (IS) value of 0.504 + or - 0.051) and global heterozygote deficit. In comparison to other amphibian studies; however, our results suggested that the level of genetic structuring in B. gargarizans was relatively low in the geographical scale of the study area. Interestingly, the speculated population bottleneck was found to be absent and the analyses provide only weak evidence for a recent contraction in size even though there was severe inbreeding (indicated by the F (IS) value) in the Chinese toad populations.

Entities:  

Mesh:

Year:  2009        PMID: 19693692     DOI: 10.1007/s11033-009-9745-6

Source DB:  PubMed          Journal:  Mol Biol Rep        ISSN: 0301-4851            Impact factor:   2.316


  22 in total

1.  Low gene flow but high genetic diversity in the threatened Mallorcan midwife toad Alytes muletensis.

Authors:  F J L Kraaijeveld-Smit; T J C Beebee; R A Griffiths; R D Moore; L Schley
Journal:  Mol Ecol       Date:  2005-10       Impact factor: 6.185

2.  Chytridiomycosis causes amphibian mortality associated with population declines in the rain forests of Australia and Central America.

Authors:  L Berger; R Speare; P Daszak; D E Green; A A Cunningham; C L Goggin; R Slocombe; M A Ragan; A D Hyatt; K R McDonald; H B Hines; K R Lips; G Marantelli; H Parkes
Journal:  Proc Natl Acad Sci U S A       Date:  1998-07-21       Impact factor: 11.205

3.  Phylogenetic relationships of toads in the Bufo bufo species group from the eastern escarpment of the Tibetan Plateau: a case of vicariance and dispersal.

Authors:  J R Macey; J A Schulte; A Larson; Z Fang; Y Wang; B S Tuniyev; T J Papenfuss
Journal:  Mol Phylogenet Evol       Date:  1998-02       Impact factor: 4.286

4.  Hypervariability of simple sequences as a general source for polymorphic DNA markers.

Authors:  D Tautz
Journal:  Nucleic Acids Res       Date:  1989-08-25       Impact factor: 16.971

5.  ANALYZING TABLES OF STATISTICAL TESTS.

Authors:  William R Rice
Journal:  Evolution       Date:  1989-01       Impact factor: 3.694

6.  A measure of population subdivision based on microsatellite allele frequencies.

Authors:  M Slatkin
Journal:  Genetics       Date:  1995-01       Impact factor: 4.562

7.  Phylogeographic analysis of the Bufo gargarizans species complex: a revisit.

Authors:  Jinzhong Fu; Cameron J Weadick; Xiaomao Zeng; Yuezhao Wang; Zhijun Liu; Yuchi Zheng; Cheng Li; Ying Hu
Journal:  Mol Phylogenet Evol       Date:  2005-10       Impact factor: 4.286

8.  Comparative analysis of intra- and interpopulation genetic diversity in Bufo bufo, using allozyme, single-locus microsatellite, minisatellite, and multilocus minisatellite data.

Authors:  K T Scribner; J W Arntzen; T Burke
Journal:  Mol Biol Evol       Date:  1994-09       Impact factor: 16.240

9.  Phylogeny of east asian bufonids inferred from mitochondrial DNA sequences (Anura: amphibia).

Authors:  W Liu; A Lathrop; J Fu; D Yang; R W Murphy
Journal:  Mol Phylogenet Evol       Date:  2000-03       Impact factor: 4.286

10.  Statistical confidence for likelihood-based paternity inference in natural populations.

Authors:  T C Marshall; J Slate; L E Kruuk; J M Pemberton
Journal:  Mol Ecol       Date:  1998-05       Impact factor: 6.185

View more
  3 in total

1.  Patterns of genetic divergence among populations of the common dormouse, Muscardinus avellanarius in the UK.

Authors:  Darlina Md Naim; Sandra Telfer; Sue Tatman; Sarah Bird; Stephen J Kemp; Rhian Hughes; Phillip C Watts
Journal:  Mol Biol Rep       Date:  2011-05-21       Impact factor: 2.316

2.  Development of eighteen polymorphic microsatellite markers in Scylla paramamosain by 5' anchored PCR technique.

Authors:  Haiyu Cui; Hongyu Ma; Lingbo Ma; Chunyan Ma; Qunqun Ma
Journal:  Mol Biol Rep       Date:  2010-12-14       Impact factor: 2.316

3.  Genetic linkage maps of barfin flounder (Verasper moseri) and spotted halibut (Verasper variegatus) based on AFLP and microsatellite markers.

Authors:  Hongyu Ma; Songlin Chen; Jingfeng Yang; Siqing Chen; Hanwen Liu
Journal:  Mol Biol Rep       Date:  2010-12-05       Impact factor: 2.316

  3 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.