Literature DB >> 19690964

Recent advances in segmental isotope labeling of proteins: NMR applications to large proteins and glycoproteins.

Lenka Skrisovska1, Mario Schubert, Frédéric H-T Allain.   

Abstract

In the last 15 years substantial advances have been made to place isotope labels in native and glycosylated proteins for NMR studies and structure determination. Key developments include segmental isotope labeling using Native Chemical Ligation, Expressed Protein Ligation and Protein Trans-Splicing. These advances are pushing the size limit of NMR spectroscopy further making larger proteins accessible for this technique. It is just emerging that segmental isotope labeling can be used to define inter-domain interactions in NMR structure determination. Labeling of post-translational modified proteins like glycoproteins remains difficult but some promising developments were recently achieved. Key achievements are segmental and site-specific labeling schemes that improve resonance assignment and structure determination of the glycan moiety. We adjusted the focus of this perspective article to concentrate on the NMR applications based on recent developments rather than on labeling methods themselves to illustrate the considerable potential for biomolecular NMR.

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Year:  2009        PMID: 19690964     DOI: 10.1007/s10858-009-9362-7

Source DB:  PubMed          Journal:  J Biomol NMR        ISSN: 0925-2738            Impact factor:   2.835


  110 in total

Review 1.  Mechanistic and kinetic considerations of protein splicing.

Authors:  Thomas C Evans; Ming-Qun Xu
Journal:  Chem Rev       Date:  2002-12       Impact factor: 60.622

Review 2.  Expressed protein ligation. Method and applications.

Authors:  Ralf David; Michael P O Richter; Annette G Beck-Sickinger
Journal:  Eur J Biochem       Date:  2004-02

Review 3.  Strategies for the preparation of homogenous glycoproteins.

Authors:  Ashraf Brik; Simon Ficht; Chi-Huey Wong
Journal:  Curr Opin Chem Biol       Date:  2006-10-13       Impact factor: 8.822

Review 4.  Glycoprotein synthesis: an update.

Authors:  David P Gamblin; Eoin M Scanlan; Benjamin G Davis
Journal:  Chem Rev       Date:  2009-01       Impact factor: 60.622

5.  Attachment of an NMR-invisible solubility enhancement tag using a sortase-mediated protein ligation method.

Authors:  Yoshihiro Kobashigawa; Hiroyuki Kumeta; Kenji Ogura; Fuyuhiko Inagaki
Journal:  J Biomol NMR       Date:  2009-01-13       Impact factor: 2.835

6.  Semisynthesis of cytotoxic proteins using a modified protein splicing element.

Authors:  T C Evans; J Benner; M Q Xu
Journal:  Protein Sci       Date:  1998-11       Impact factor: 6.725

7.  Enhanced formation of mouse hybridomas without hat treatment in a serum-free medium.

Authors:  N Yabe; Y Matsuya; I Yamane; M Takada
Journal:  In Vitro Cell Dev Biol       Date:  1986-07

8.  Expressed protein ligation: a general method for protein engineering.

Authors:  T W Muir; D Sondhi; P A Cole
Journal:  Proc Natl Acad Sci U S A       Date:  1998-06-09       Impact factor: 11.205

9.  Chemical synthesis of a glycoprotein having an intact human complex-type sialyloligosaccharide under the Boc and Fmoc synthetic strategies.

Authors:  Naoki Yamamoto; Yasutaka Tanabe; Ryo Okamoto; Philip E Dawson; Yasuhiro Kajihara
Journal:  J Am Chem Soc       Date:  2007-12-18       Impact factor: 15.419

Review 10.  Biological roles of oligosaccharides: all of the theories are correct.

Authors:  A Varki
Journal:  Glycobiology       Date:  1993-04       Impact factor: 4.313

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  27 in total

1.  Efficient segmental isotope labeling of multi-domain proteins using Sortase A.

Authors:  Lee Freiburger; Miriam Sonntag; Janosch Hennig; Jian Li; Peijian Zou; Michael Sattler
Journal:  J Biomol NMR       Date:  2015-08-30       Impact factor: 2.835

2.  Observing selected domains in multi-domain proteins via sortase-mediated ligation and NMR spectroscopy.

Authors:  Mary Anne Refaei; Al Combs; Douglas J Kojetin; John Cavanagh; Carol Caperelli; Mark Rance; Jennifer Sapitro; Pearl Tsang
Journal:  J Biomol NMR       Date:  2010-12-29       Impact factor: 2.835

3.  Stable isotope labeling of glycoprotein expressed in silkworms using immunoglobulin G as a test molecule.

Authors:  Hirokazu Yagi; Masatoshi Nakamura; Jun Yokoyama; Ying Zhang; Takumi Yamaguchi; Sachiko Kondo; Jun Kobayashi; Tatsuya Kato; Enoch Y Park; Shiori Nakazawa; Noritaka Hashii; Nana Kawasaki; Koichi Kato
Journal:  J Biomol NMR       Date:  2015-04-23       Impact factor: 2.835

4.  A topical issue: production and labeling of biological macromolecules for NMR investigations.

Authors:  Gerhard Wagner
Journal:  J Biomol NMR       Date:  2010-01       Impact factor: 2.835

5.  Chemical ligation of the influenza M2 protein for solid-state NMR characterization of the cytoplasmic domain.

Authors:  Byungsu Kwon; Daniel Tietze; Paul B White; Shu Y Liao; Mei Hong
Journal:  Protein Sci       Date:  2015-05-27       Impact factor: 6.725

Review 6.  An introduction to NMR-based approaches for measuring protein dynamics.

Authors:  Ian R Kleckner; Mark P Foster
Journal:  Biochim Biophys Acta       Date:  2010-11-06

7.  Segmental isotopic labeling by asparaginyl endopeptidase-mediated protein ligation.

Authors:  Kornelia M Mikula; Luisa Krumwiede; Andreas Plückthun; Hideo Iwaï
Journal:  J Biomol NMR       Date:  2018-03-13       Impact factor: 2.835

8.  Solution structure of the two RNA recognition motifs of hnRNP A1 using segmental isotope labeling: how the relative orientation between RRMs influences the nucleic acid binding topology.

Authors:  Pierre Barraud; Frédéric H-T Allain
Journal:  J Biomol NMR       Date:  2012-12-18       Impact factor: 2.835

Review 9.  Isotope labeling for solution and solid-state NMR spectroscopy of membrane proteins.

Authors:  Raffaello Verardi; Nathaniel J Traaseth; Larry R Masterson; Vitaly V Vostrikov; Gianluigi Veglia
Journal:  Adv Exp Med Biol       Date:  2012       Impact factor: 2.622

10.  Structure-based engineering and comparison of novel split inteins for protein ligation.

Authors:  A Sesilja Aranko; Jesper S Oeemig; Dongwen Zhou; Tommi Kajander; Alexander Wlodawer; Hideo Iwaï
Journal:  Mol Biosyst       Date:  2014-05
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