Literature DB >> 19689315

10 years of tension on chromatin: results from single molecule force spectroscopy.

Fan-Tso Chien1, John van Noort.   

Abstract

The compact, yet dynamic organization of chromatin plays an essential role in regulating gene expression. Although the static structure of chromatin fibers has been studied extensively, the controversy about the higher order folding remains. In the past ten years a number of studies have addressed chromatin folding with single molecule force spectroscopy. By manipulating chromatin fibers individually, the mechanical properties of the fibers were quantified with piconewton and nanometer accuracy. Here, we review the results of force induced chromatin unfolding and compare the differences between experimental conditions and single molecule manipulation techniques like force and position clamps. From these studies, five major features appeared upon forced extension of chromatin fibers: the elastic stretching of chromatin's higher order structure, the breaking of internucleosomal contacts, unwrapping of the first turn of DNA, unwrapping of the second turn of DNA, and the dissociation of histone octamers. These events occur sequentially at the increasing force. Resolving force induced structural changes of chromatin fibers at the single molecule level will help to provide a physical understanding of processes involving chromatin that occur in vivo and will reveal the mechanical constraints that are relevant for processing and maintenance of DNA in eukaryotes.

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Year:  2009        PMID: 19689315     DOI: 10.2174/138920109788922128

Source DB:  PubMed          Journal:  Curr Pharm Biotechnol        ISSN: 1389-2010            Impact factor:   2.837


  30 in total

Review 1.  Toward convergence of experimental studies and theoretical modeling of the chromatin fiber.

Authors:  Tamar Schlick; Jeff Hayes; Sergei Grigoryev
Journal:  J Biol Chem       Date:  2011-12-07       Impact factor: 5.157

2.  The effect of linker histone's nucleosome binding affinity on chromatin unfolding mechanisms.

Authors:  Rosana Collepardo-Guevara; Tamar Schlick
Journal:  Biophys J       Date:  2011-10-05       Impact factor: 4.033

3.  The radial distribution function of worm-like chains.

Authors:  N B Becker; A Rosa; R Everaers
Journal:  Eur Phys J E Soft Matter       Date:  2010-06-02       Impact factor: 1.890

Review 4.  New insights into nucleosome and chromatin structure: an ordered state or a disordered affair?

Authors:  Karolin Luger; Mekonnen L Dechassa; David J Tremethick
Journal:  Nat Rev Mol Cell Biol       Date:  2012-06-22       Impact factor: 94.444

Review 5.  Towards quantitative analysis of gene regulation by enhancers.

Authors:  Ekaterina V Nizovtseva; Stefjord Todolli; Wilma K Olson; Vasily M Studitsky
Journal:  Epigenomics       Date:  2017-08-11       Impact factor: 4.778

Review 6.  Nucleosome mobility and the regulation of gene expression: Insights from single-molecule studies.

Authors:  Sergei Rudnizky; Omri Malik; Adaiah Bavly; Lilach Pnueli; Philippa Melamed; Ariel Kaplan
Journal:  Protein Sci       Date:  2017-04-02       Impact factor: 6.725

Review 7.  Dynamic chromatin technologies: from individual molecules to epigenomic regulation in cells.

Authors:  Olivier Cuvier; Beat Fierz
Journal:  Nat Rev Genet       Date:  2017-05-22       Impact factor: 53.242

8.  Sequence-based prediction of single nucleosome positioning and genome-wide nucleosome occupancy.

Authors:  Thijn van der Heijden; Joke J F A van Vugt; Colin Logie; John van Noort
Journal:  Proc Natl Acad Sci U S A       Date:  2012-08-20       Impact factor: 11.205

9.  Characterization of nucleosome unwrapping within chromatin fibers using magnetic tweezers.

Authors:  Fan-Tso Chien; Thijn van der Heijden
Journal:  Biophys J       Date:  2014-07-15       Impact factor: 4.033

Review 10.  Chromatin fiber dynamics under tension and torsion.

Authors:  Christophe Lavelle; Jean-Marc Victor; Jordanka Zlatanova
Journal:  Int J Mol Sci       Date:  2010-04-12       Impact factor: 5.923

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