Literature DB >> 19688029

SUBTLE CONTROL IN SOLUTION AND CRYSTAL STRUCTURES WITH WEAK HYDROGEN BONDS: THE UNUSUAL PROFILE OF DIMETHYL 3, 12-DIOXO-7, 8 DITHIA 4, 11-DIAZABICYCLO[12.2.2]OCTADECA-1(16), 14, 17-TRIENE 5, 10-DICARBOXYLATE (TDA1).

Isabella L Karle1, Lulu Huang, Punna Venkateshwarlu, A V S Sarma, Subramania Ranganathan.   

Abstract

The structural features of the title compound were determined or examined by three diverse procedures: single crystal X-ray diffraction analysis, solution spectroscopic procedures and Quantum mechanical theoretical calculations. The conformational asymmetry of the macrocycle provides the opportunity to form one strong NH···OC intermolecular hydrogen bond, as well as, a number of weak CH···OC bonds. The interior of the macrocycle has short approaches for NH(...)π and NH···S. The many weak hydrogen bonds cooperate to form a very hard, robust crystal. Crystal parameters: C(18)H(22)N(2)O(6)S(2), P2(1)2(1)2(1), a = 5.108(1) Å, b = 18.948(4) Å, c = 21.029(3) Å, α = β = γ = 90°. Quantum chemical calculations have provided a strong foundation for weak hydrogen bonds. Contrary to popular belief the present work has conclusively proved that the importance of weak hydrogen bonds are perhaps underestimated since calculations show that the energy of duplex are significantly lower then estimated from the identified hydrogen bonding.

Entities:  

Year:  2009        PMID: 19688029      PMCID: PMC2656137          DOI: 10.3987/COM-08-S(D)4

Source DB:  PubMed          Journal:  Heterocycles        ISSN: 0385-5414            Impact factor:   0.831


  5 in total

1.  Structural basis for bending of organic crystals.

Authors:  C Malla Reddy; Ravi C Gundakaram; Srinivas Basavoju; Michael T Kirchner; K Anantha Padmanabhan; Gautam R Desiraju
Journal:  Chem Commun (Camb)       Date:  2005-06-23       Impact factor: 6.222

2.  The C-H...pi hydrogen bond in the benzene-trifluoromethane adduct: a rotational study.

Authors:  Juan C López; Walther Caminati; José L Alonso
Journal:  Angew Chem Int Ed Engl       Date:  2005-12-23       Impact factor: 15.336

3.  A robust hybrid peptide crystal formed with weak hydrogen bonds.

Authors:  Isabella L Karle; P Venkateshwarlu; S Ranganathan
Journal:  Biopolymers       Date:  2006       Impact factor: 2.505

4.  Glycyl-L-leucyl-L-tyrosine dihydrate 2-propanol solvate.

Authors:  B Dalhus; C H Görbitz
Journal:  Acta Crystallogr C       Date:  1996-08-15       Impact factor: 1.172

5.  Comparison of C-H...pi and hydrophobic interactions in a beta-hairpin peptide: impact on stability and specificity.

Authors:  Chad D Tatko; Marcey L Waters
Journal:  J Am Chem Soc       Date:  2004-02-25       Impact factor: 15.419

  5 in total
  5 in total

1.  Calculation of strong and weak interactions in TDA1 and RangDP52 by the kernel energy method.

Authors:  Lulu Huang; Lou Massa; Isabella Karle; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2009-02-20       Impact factor: 11.205

2.  tert-Butyl 2-methyl-2-(4-nitro-benzo-yl)propanoate.

Authors:  Chelsey M Crosse; Marshall W Logue; Rudy L Luck; Louis R Pignotti; Melissa F Waineo
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

3.  tert-Butyl 2-(4-chloro-benzo-yl)-2-methyl-propanoate.

Authors:  Chelsey M Crosse; Emily C Kelly; Marshall W Logue; Rudy L Luck; John S Maass; Katlyn C Mehne; Louis R Pignotti
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

4.  tert-Butyl 2-benzoyl-2-methyl-propanoate.

Authors:  Marshall W Logue; Rudy L Luck; Nicklaus S Maynard; Sandra S Orlowski; Louis R Pignotti; Annie L Putman; Kelli M Whelan
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30

5.  tert-Butyl 2-methyl-2-(4-methyl-benzo-yl)propanoate.

Authors:  Graham B Gould; Brock G Jackman; Marshall W Logue; Rudy L Luck; Louis R Pignotti; Adrian R Smith; Nicholas M White
Journal:  Acta Crystallogr Sect E Struct Rep Online       Date:  2010-01-30
  5 in total

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