Literature DB >> 19234108

Calculation of strong and weak interactions in TDA1 and RangDP52 by the kernel energy method.

Lulu Huang1, Lou Massa, Isabella Karle, Jerome Karle.   

Abstract

Using the Kernel Energy Method we apply ab initio quantum mechanics to study the relative importance of weak and strong interactions (including hydrogen bonds) in the crystal structures of the title compounds TDA1 and RangDP52. Perhaps contrary to widespread belief, in these compounds the weak interaction energies, because of their large number and cooperativity, can be significant to the binding energetics of the crystal, and thus also to its other properties.

Entities:  

Year:  2009        PMID: 19234108      PMCID: PMC2728213          DOI: 10.1073/pnas.0900403106

Source DB:  PubMed          Journal:  Proc Natl Acad Sci U S A        ISSN: 0027-8424            Impact factor:   11.205


  14 in total

1.  C-H...pi-interactions in proteins.

Authors:  M Brandl; M S Weiss; A Jabs; J Sühnel; R Hilgenfeld
Journal:  J Mol Biol       Date:  2001-03-16       Impact factor: 5.469

2.  Kernel energy method: application to insulin.

Authors:  Lulu Huang; Lou Massa; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2005-08-24       Impact factor: 11.205

3.  Kernel energy method: application to DNA.

Authors:  Lulu Huang; Lou Massa; Jerome Karle
Journal:  Biochemistry       Date:  2005-12-20       Impact factor: 3.162

4.  Role of Hartree-Fock and Kohn-Sham orbitals in the basis set superposition error for systems linked by hydrogen bonds.

Authors:  Jorge Garza; José-Zeferino Ramírez; Rubicelia Vargas
Journal:  J Phys Chem A       Date:  2005-02-03       Impact factor: 2.781

5.  The Kernel Energy Method: application to a tRNA.

Authors:  Lulu Huang; Lou Massa; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2006-01-23       Impact factor: 11.205

6.  Drug target interaction energies by the kernel energy method in aminoglycoside drugs and ribosomal A site RNA targets.

Authors:  Lulu Huang; Lou Massa; Jerome Karle
Journal:  Proc Natl Acad Sci U S A       Date:  2007-03-01       Impact factor: 11.205

7.  A robust hybrid peptide crystal formed with weak hydrogen bonds.

Authors:  Isabella L Karle; P Venkateshwarlu; S Ranganathan
Journal:  Biopolymers       Date:  2006       Impact factor: 2.505

Review 8.  Aromatic-aromatic interaction: a mechanism of protein structure stabilization.

Authors:  S K Burley; G A Petsko
Journal:  Science       Date:  1985-07-05       Impact factor: 47.728

9.  Pi-pi interactions: the geometry and energetics of phenylalanine-phenylalanine interactions in proteins.

Authors:  C A Hunter; J Singh; J M Thornton
Journal:  J Mol Biol       Date:  1991-04-20       Impact factor: 5.469

10.  SUBTLE CONTROL IN SOLUTION AND CRYSTAL STRUCTURES WITH WEAK HYDROGEN BONDS: THE UNUSUAL PROFILE OF DIMETHYL 3, 12-DIOXO-7, 8 DITHIA 4, 11-DIAZABICYCLO[12.2.2]OCTADECA-1(16), 14, 17-TRIENE 5, 10-DICARBOXYLATE (TDA1).

Authors:  Isabella L Karle; Lulu Huang; Punna Venkateshwarlu; A V S Sarma; Subramania Ranganathan
Journal:  Heterocycles       Date:  2009-04-01       Impact factor: 0.831

View more
  2 in total

1.  Protoribosome by quantum kernel energy method.

Authors:  Lulu Huang; Miri Krupkin; Anat Bashan; Ada Yonath; Lou Massa
Journal:  Proc Natl Acad Sci U S A       Date:  2013-08-26       Impact factor: 11.205

2.  Crystal structure of (9S,10S)-10-eth-oxy-9-hy-droxy-6,6,9-trimethyl-3-pentyl-7,8,9,10-tetra-hydro-6H-benzo[c]chromen-1-yl 4-methyl-benzene-sulfonate.

Authors:  Waseem Gul; Ahmed Galal; Mahmoud A ElSohly; Paulo Carvalho
Journal:  Acta Crystallogr E Crystallogr Commun       Date:  2015-12-24
  2 in total

北京卡尤迪生物科技股份有限公司 © 2022-2023.