Literature DB >> 19686079

Nucleomorph genomes.

Christa E Moore1, John M Archibald.   

Abstract

Nucleomorphs are the remnant nuclei of algal endosymbionts in cryptophytes and chlorarachniophytes, two evolutionarily distinct unicellular eukaryotic lineages that acquired photosynthesis secondarily by the engulfment of red and green algae, respectively. At less than one million base pairs in size, nucleomorph genomes are the most highly reduced nuclear genomes known, with three small linear chromosomes and a gene density similar to that seen in prokaryotes. The independent origin of nucleomorphs in cryptophytes and chlorarachniophytes presents an interesting opportunity to study the reductive evolutionary forces that have led to their remarkable convergence upon similar genome architectures and coding capacities. In this article, we review the current state of knowledge with respect to the structure, function, origin, and evolution of nucleomorph genomes across the known diversity of cryptophyte and chlorarachniophyte algae.

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Year:  2009        PMID: 19686079     DOI: 10.1146/annurev-genet-102108-134809

Source DB:  PubMed          Journal:  Annu Rev Genet        ISSN: 0066-4197            Impact factor:   16.830


  29 in total

1.  Genomic characterization of Neoparamoeba pemaquidensis (Amoebozoa) and its kinetoplastid endosymbiont.

Authors:  Goro Tanifuji; Eunsoo Kim; Naoko T Onodera; Rebecca Gibeault; Marlena Dlutek; Richard J Cawthorn; Ivan Fiala; Julius Lukes; Spencer J Greenwood; John M Archibald
Journal:  Eukaryot Cell       Date:  2011-06-10

2.  Genomic perspectives on the birth and spread of plastids.

Authors:  John M Archibald
Journal:  Proc Natl Acad Sci U S A       Date:  2015-04-20       Impact factor: 11.205

Review 3.  Probing the evolution, ecology and physiology of marine protists using transcriptomics.

Authors:  David A Caron; Harriet Alexander; Andrew E Allen; John M Archibald; E Virginia Armbrust; Charles Bachy; Callum J Bell; Arvind Bharti; Sonya T Dyhrman; Stephanie M Guida; Karla B Heidelberg; Jonathan Z Kaye; Julia Metzner; Sarah R Smith; Alexandra Z Worden
Journal:  Nat Rev Microbiol       Date:  2016-11-21       Impact factor: 60.633

4.  Gene similarity networks provide tools for understanding eukaryote origins and evolution.

Authors:  David Alvarez-Ponce; Philippe Lopez; Eric Bapteste; James O McInerney
Journal:  Proc Natl Acad Sci U S A       Date:  2013-04-01       Impact factor: 11.205

Review 5.  Reductive evolution of chloroplasts in non-photosynthetic plants, algae and protists.

Authors:  Lucia Hadariová; Matej Vesteg; Vladimír Hampl; Juraj Krajčovič
Journal:  Curr Genet       Date:  2017-10-12       Impact factor: 3.886

6.  Actin gene family dynamics in cryptomonads and red algae.

Authors:  Goro Tanifuji; John M Archibald
Journal:  J Mol Evol       Date:  2010-08-11       Impact factor: 2.395

7.  Complete nucleomorph genome sequence of the nonphotosynthetic alga Cryptomonas paramecium reveals a core nucleomorph gene set.

Authors:  Goro Tanifuji; Naoko T Onodera; Travis J Wheeler; Marlena Dlutek; Natalie Donaher; John M Archibald
Journal:  Genome Biol Evol       Date:  2010-12-08       Impact factor: 3.416

8.  Emergence and expansion of TFIIB-like factors in the plant kingdom.

Authors:  Bruce A Knutson
Journal:  Gene       Date:  2013-04-20       Impact factor: 3.688

9.  Genome structure and metabolic features in the red seaweed Chondrus crispus shed light on evolution of the Archaeplastida.

Authors:  Jonas Collén; Betina Porcel; Wilfrid Carré; Steven G Ball; Cristian Chaparro; Thierry Tonon; Tristan Barbeyron; Gurvan Michel; Benjamin Noel; Klaus Valentin; Marek Elias; François Artiguenave; Alok Arun; Jean-Marc Aury; José F Barbosa-Neto; John H Bothwell; François-Yves Bouget; Loraine Brillet; Francisco Cabello-Hurtado; Salvador Capella-Gutiérrez; Bénédicte Charrier; Lionel Cladière; J Mark Cock; Susana M Coelho; Christophe Colleoni; Mirjam Czjzek; Corinne Da Silva; Ludovic Delage; France Denoeud; Philippe Deschamps; Simon M Dittami; Toni Gabaldón; Claire M M Gachon; Agnès Groisillier; Cécile Hervé; Kamel Jabbari; Michael Katinka; Bernard Kloareg; Nathalie Kowalczyk; Karine Labadie; Catherine Leblanc; Pascal J Lopez; Deirdre H McLachlan; Laurence Meslet-Cladiere; Ahmed Moustafa; Zofia Nehr; Pi Nyvall Collén; Olivier Panaud; Frédéric Partensky; Julie Poulain; Stefan A Rensing; Sylvie Rousvoal; Gaelle Samson; Aikaterini Symeonidi; Jean Weissenbach; Antonios Zambounis; Patrick Wincker; Catherine Boyen
Journal:  Proc Natl Acad Sci U S A       Date:  2013-03-15       Impact factor: 11.205

10.  Endosymbiotic and horizontal gene transfer in microbial eukaryotes: Impacts on cell evolution and the tree of life.

Authors:  Cheong Xin Chan; Debashish Bhattacharya; Adrian Reyes-Prieto
Journal:  Mob Genet Elements       Date:  2012-03-01
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