Literature DB >> 19685861

Binding of DNA to zwitterionic lipid layers mediated by divalent cations.

Demmelash H Mengistu1, Klemen Bohinc, Sylvio May.   

Abstract

Divalent cations, i.e., calcium, magnesium, and others, are able to enhance the ability of DNA to interact with membranes that are composed of zwitterionic lipids such as phosphatidylcholine. The resulting condensed complexes offer potential applications as nontoxic gene delivery vehicles. The present study suggests a generic theoretical model to describe the energetics and structural features of a zwitterionic lipid-DNA complex in the presence of divalent cations. Specifically, we consider the adsorption of a single molecule of double-stranded DNA onto a planar zwitterionic lipid layer. Our theoretical model is based on the continuum Poisson-Boltzmann formalisms, which we modified so as to account for the two opposite charges and orientational freedom of the zwitterionic lipid headgroups. We find a substantially more favorable adsorption free energy of the DNA if divalent cations are present. In addition, our model predicts the divalent cations to preferentially interact with the phosphate groups of the zwitterionic lipids, given these lipids are located in close vicinity to the DNA. This is accompanied by a small but notable reorientation of the zwitterionic headgroups toward the DNA. We demonstrate that the binding of DNA onto a zwitterionic lipid layer is not driven by the release of counterions. Instead, the binding leads to a partial redistribution of the divalent cations, from the phosphate groups of the DNA (prior to the binding) to the phosphate groups of the zwitterionic lipids (after the binding). Our results thus suggest a general physical mechanism underlying complex formation between DNA and zwitterionic lipids in terms of mean-field electrostatics, i.e., neither involving correlations nor specific interactions of the divalent cations.

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Year:  2009        PMID: 19685861     DOI: 10.1021/jp904986j

Source DB:  PubMed          Journal:  J Phys Chem B        ISSN: 1520-5207            Impact factor:   2.991


  12 in total

1.  A Microsphere-Supported Lipid Bilayer Platform for DNA Reactions on a Fluid Surface.

Authors:  Aurora Fabry-Wood; Madalyn E Fetrow; Carl W Brown; Nicholas A Baker; Nadiezda Fernandez Oropeza; Andrew P Shreve; Gabriel A Montaño; Darko Stefanovic; Matthew R Lakin; Steven W Graves
Journal:  ACS Appl Mater Interfaces       Date:  2017-08-24       Impact factor: 9.229

Review 2.  Engineering Lipid Membranes with Programmable DNA Nanostructures.

Authors:  Qi Shen; Michael W Grome; Yang Yang; Chenxiang Lin
Journal:  Adv Biosyst       Date:  2019-12-09

3.  Self-organization of Nucleic Acids in Lipid Constructs.

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Journal:  Curr Opin Colloid Interface Sci       Date:  2016-09-28       Impact factor: 6.448

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Authors:  Mohammad Hasan Darvishi; Abdollah Allahverdi; Hadi Hashemzadeh; Hamid Reza Javadi
Journal:  Sci Rep       Date:  2022-10-20       Impact factor: 4.996

5.  Systematic Parametrization of Divalent Metal Ions for the OPC3, OPC, TIP3P-FB, and TIP4P-FB Water Models.

Authors:  Zhen Li; Lin Frank Song; Pengfei Li; Kenneth M Merz
Journal:  J Chem Theory Comput       Date:  2020-06-29       Impact factor: 6.006

6.  Hydrophobic Interactions between DNA Duplexes and Synthetic and Biological Membranes.

Authors:  Sioned F Jones; Himanshu Joshi; Stephen J Terry; Jonathan R Burns; Aleksei Aksimentiev; Ulrike S Eggert; Stefan Howorka
Journal:  J Am Chem Soc       Date:  2021-05-20       Impact factor: 15.419

7.  MicroRNAs are transported in plasma and delivered to recipient cells by high-density lipoproteins.

Authors:  Kasey C Vickers; Brian T Palmisano; Bassem M Shoucri; Robert D Shamburek; Alan T Remaley
Journal:  Nat Cell Biol       Date:  2011-03-20       Impact factor: 28.824

8.  Membrane binding of plasmid DNA and endocytic pathways are involved in electrotransfection of mammalian cells.

Authors:  Mina Wu; Fan Yuan
Journal:  PLoS One       Date:  2011-06-13       Impact factor: 3.240

Review 9.  MicroRNAs as biomarkers for myocardial infarction.

Authors:  Kanita Salic; Leon J De Windt
Journal:  Curr Atheroscler Rep       Date:  2012-06       Impact factor: 5.113

10.  Membrane sculpting by curved DNA origami scaffolds.

Authors:  Henri G Franquelim; Alena Khmelinskaia; Jean-Philippe Sobczak; Hendrik Dietz; Petra Schwille
Journal:  Nat Commun       Date:  2018-02-23       Impact factor: 14.919

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